RNA id: TU537114


Basic Information

Item Value
RNA id TU537114
length 254
lncRNA type intronic
GC content 0.41
exon number 2
gene id G467970
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9011924 ~ 9012255 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTACGCCGTCATCACCCAGGTGTTGATGGCGCGTGATGTGAGCGCAGGTGAGACCTGAACATCTCATGTCGCTATCTGTGTTTAAACTAAACTCATTTAAAGCTTGCCAATTTAAACATACATCCATAAGACGCGCAAGTCTTTCAAGTCTTGCACCTAAACGGATAAATTCACACAAAAATGATGTCAACATGCCCATCTTAGCGAGTATCCTAACAAACATAGTAGGTTATGTCTTAAGAGAAAAACGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537088 lncRNA downstream 114660 8897049 ~ 8897264 (-) True G467944
TU537087 lncRNA downstream 117126 8894542 ~ 8894798 (-) True G467943
TU537086 lncRNA downstream 117672 8893917 ~ 8894252 (-) True G467942
TU537085 lncRNA downstream 119388 8892246 ~ 8892536 (-) True G467941
TU537084 lncRNA downstream 125053 8886541 ~ 8886871 (-) True G467940
TU537122 lncRNA upstream 74314 9086569 ~ 9086953 (-) True G467978
TU537697 lncRNA upstream 146491 9158746 ~ 9159564 (-) True G468462
TU537702 lncRNA upstream 165278 9177533 ~ 9177742 (-) True G468467
TU537716 lncRNA upstream 192315 9204570 ~ 9204847 (-) True G468481
TU537695 lncRNA upstream 318775 9331030 ~ 9333199 (-) True G468460
CI01000325_08701427_08704727.mRNA mRNA downstream 307197 8701300 ~ 8704727 (-) True CI01000325_08701427_08704727
CI01000325_08645444_08676032.mRNA mRNA downstream 335892 8644731 ~ 8676032 (-) True CI01000325_08645444_08676032
CI01000325_08609784_08639480.mRNA mRNA downstream 369885 8609624 ~ 8642039 (-) False CI01000325_08609784_08639480
CI01000325_08571807_08594165.mRNA mRNA downstream 417188 8571453 ~ 8594736 (-) False CI01000325_08571807_08594165
CI01000325_08517828_08523052.mRNA mRNA downstream 488468 8517614 ~ 8523456 (-) True CI01000325_08517828_08523052
CI01000325_09266964_09281814.mRNA mRNA upstream 254369 9266624 ~ 9282062 (-) True CI01000325_09266964_09281814
CI01000325_09286047_09286556.mRNA mRNA upstream 273279 9285534 ~ 9286556 (-) False CI01000325_09286047_09286556
CI01000325_09288339_09296072.mRNA mRNA upstream 275777 9288032 ~ 9296126 (-) True CI01000325_09288339_09296072
CI01000325_09334619_09368476.mRNA mRNA upstream 322349 9334604 ~ 9368476 (-) True CI01000325_09334619_09368476
CI01000325_09400787_09422170.mRNA mRNA upstream 388532 9400787 ~ 9422170 (-) True CI01000325_09400787_09422170
TU536859 other downstream 314341 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 440446 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 1056732 7946345 ~ 7955192 (-) True G467578
TU536664 other downstream 1395094 7615486 ~ 7616830 (-) True G467570
TU534579 other downstream 3383756 5626213 ~ 5628168 (-) True G465716
TU537690 other upstream 273277 9287209 ~ 9287324 (-) True G468455
TU537962 other upstream 1154844 10167099 ~ 10192342 (-) True G468702
TU538097 other upstream 1303875 10316130 ~ 10316685 (-) True G468823

Expression Profile