RNA id: TCONS_00000019


Basic Information

Item Value
RNA id TCONS_00000019
length 1809
RNA type mRNA
GC content 0.51
exon number 8
gene id XLOC_000007
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 119960 ~ 125246 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAGCGCAGTAAATATGAGTCTGCTGCTTGTGTTTTCTCTGCTCTCGAGTCTCCATTACTGCCATTCAGCAGCAGTGTTCGTGCACAGAGATGAAGCTCACGAGGTGTTGATCAGGAGCAAACGAGCCAACTCAGGCTGGTTTGAGGAGCTGAAGACGGGGAATCTGGAGCGCGAGTGTCTGGAGGAGAAATGCTCGTATGAGGAGGCGCGCGAGGTGTTCGAGCACACAGAGGCCACGAATGAGTTCTGGAAGATCTACGATGTTAAAGATCACTGCGCATCCAGTCCATGTGAGCATGACGGCCTCTGCACCACACAGAACGCGGACTcctacatgtgtttgtgtgcgccgGGCTTCAGCGGACGCCACTGTGAGCAATCGATTGGAGACGTTACCGACTCCTGTCTGCATGATAACGGCGGCTGCGAACACTTCTGCACGGAGCAGGACGGATGGAGAAACTGCTCCTGCGCAGACGGCTATTACCTAGATAACGGCGGGCAGAAGTGCCGGAGTCACGaggtgTTTCCGTGTGGGAAGGTTCCTCTCCTGCAGGCTGGAAAAGCTGCGGATCATCAGGTGGATCTCAGATCTCGTATCGTTGGAGGATCTGAATGTCCTAAAGGTCACTGTCCGTGGCAGgtgctgcTGAAGTACGGTGAGAAGGGTTTCTGTGGAGGTGTGATCTACAAGCCCACCTGGATCCTCACAGCTGCTCACTGCTTGGAAAAGCTCAAGGTCAAGTTCCTCAGGATAGTGGCAGgtgagcATGATCTGGAGGTGGACGAAGGCACGGAGCAGCTCATCCAGGTGGATCAGATGTTCACACACCCTGCGTACGTGTCTGAGACAGCGGACAGTGACATCGCCCTGCTGCGTCTGCGCACCCCCATCGTCTACAGTGTGTATGCGGTGCCGGTGTGTTTGCCGCTGCGGGAGATGGCGGAGCGCGAGCTGTGGGCGGTCAGCAAACACACGGTGAGCGGCTGGGGCAAACGCAGCGAGGACGGGCCGACCTCTCGTCTGCTGCGCCGGCTGCTGGTGCCGCGCATCCGCACGCAGGAGTGTGTGCAGGTCAGCAACCTCACGCTCACCAGCAACATGTTCTGCGCCGGATACATCGAGGGCCGGCAGGACTCCTGTAAGGGTGACAGCGGCGGCCCGCTGGTGACCCGGTACCGAGACACCGCCTTCCTACTGGGCATCGTGAGCTGGGGGAAAGGCTGCGCTCGCCCGGGCTCCTACGGCATCTACACACGCGTCTCCAACTACCTGCAGTGGATCCGACAAACAACCAACACCACGATACACTGATGAAGACATGACCCATGTGCATATCTCATCAAGATTGCTACTCTTAGGTGAACAATTAACAAATATTAACTATTATAGTTAATGTTTGTTAAAAATAGCACaattatattgaaaataaaaaatatttatattaattatgaagACGGTGTTATAGCCCAAAATACCCAATAGTTGAGCATCAGCTGCTTTCCTGAGATCCTGTACATATTAGACTCAGATCTGATATTTTGCGCAGGTTATATTGCATTTTTAGCAGGTATTTAATGATTTTGCTCTGATTAATCAGGAGATGTGCAGCTCATTATCTCCATATTATTAATGCTCAACTGTAGTAAACACTCGCTTTACATAAATCCAAAACCAGCCAATAAATATCAGCGCATCCCTATTTAACGCTTGTGTTCATGTCTGATGATCTTCTGTTGTGTGTATTCTCTCAGTGGCTTGTCCATCACTGTCTCATTATCCAATAAATAATGCAGATGTGATTC

Function

GO:

id name namespace
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-010814-1 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood plasma; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including acute pancreatitis; artery disease (multiple); diabetes mellitus (multiple); factor VII deficiency; and obesity. Orthologous to human F7 (coagulation factor VII).

Ensembl:

ensembl_id ENSDART00000013209

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000017 lncRNA upstream 81514 36727 ~ 38446 (+) True XLOC_000005
TCONS_00003001 lncRNA upstream 87607 27814 ~ 32353 (+) False XLOC_000004
TCONS_00000015 lncRNA upstream 87607 31787 ~ 32353 (+) True XLOC_000004
TCONS_00000013 lncRNA upstream 88055 27814 ~ 31905 (+) False XLOC_000004
TCONS_00000021 lncRNA downstream 2020 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000022 lncRNA downstream 2054 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000023 lncRNA downstream 5381 130627 ~ 131221 (+) True XLOC_000008
TCONS_00003002 lncRNA downstream 31546 156792 ~ 157282 (+) True XLOC_000011
TCONS_00002801 lncRNA downstream 96139 221385 ~ 222804 (+) True XLOC_000014
TCONS_00000018 mRNA upstream 814 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000016 mRNA upstream 80769 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000012 mRNA upstream 85630 27690 ~ 34330 (+) False XLOC_000004
TCONS_00000011 mRNA upstream 92705 25585 ~ 27255 (+) True XLOC_000003
TCONS_00000008 mRNA upstream 96571 18716 ~ 23389 (+) False XLOC_000002
TCONS_00000020 mRNA downstream 2004 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000024 mRNA downstream 10657 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000025 mRNA downstream 19038 144284 ~ 151998 (+) True XLOC_000010
TCONS_00000026 mRNA downstream 32547 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000027 mRNA downstream 32788 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000003 other upstream 106703 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 134794 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 388767 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 412343 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 451198 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1093445 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06295715_06298755.mRNA True 1241 mRNA 0.55 7 CI01000299 6295613 ~ 6298775 (-)