RNA id: TCONS_00021178


Basic Information

Item Value
RNA id TCONS_00021178
length 624
RNA type processed_transcript
GC content 0.54
exon number 6
gene id XLOC_010822
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31900127 ~ 31919568 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTCGCCTGCGGAATGCACTGAAGGGGGTGCTGCTGCCCAGGAGGCGGGGCCAGGCAATGGTGATCCTTCACTTCCCCAGGTttatgccccacccccttcataTCCTCCACCTGGACAAGCCCCGCCCACACCTGCTGCCCGACTGCCACCCCTCGATTTCAGCGCTGCTCATCCAAATTCAGAATATGCAGATCATCATCAGCTGAGAGTCTACCAGGGCCCTCAGCACGACGGGACGGAGTCTATAACTGCCAGTAACACGGATGATTCTCTGGCACCCGTGACGTCTGACCCACAGTCTCTCAGTGTTTCTGTGGCCTCCGGTAGCGGAGCTGCAGGAGGAAGTGACGAGGAAGGAGGCGGGAAGGCTCAACCTAAAAGGCTCCATGTTTCCAATATCCCTTTTAGGTTTCGAGACCCAGACTTGAGGCAGATGTTTGggCAATTTGGCAAGATTCTAGATGTAGAGATCATCTTTAATGAGAGAGGATCCAAGGGTTTTGGATTTGTGACGTTTGAGAGTGCAGTGGAAGCAGATCGAGCCAGAGAGAAGCTCAACGGTACGATCGTGGAGGGAAGGAAGATTGAGGTGAACAACGCTACAGCAAGGGTGGTAACAAAA

Function

GO:

id name namespace
GO:0048739 cardiac muscle fiber development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0003015 heart process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007399 nervous system development biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040923-2 Enables RNA binding activity. Acts upstream of or within several processes, including RNA splicing; muscle cell development; and regulation of RNA splicing. Located in nucleus. Is expressed in several structures, including cardiovascular system; fin bud; musculature system; paraxial mesoderm; and skeletal muscle satellite cell.

Ensembl:

ensembl_id ENSDART00000135669

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021811 lncRNA downstream 13824 31882148 ~ 31892032 (-) True XLOC_010821
TCONS_00021176 lncRNA downstream 24233 31878685 ~ 31881623 (-) True XLOC_010820
TCONS_00021810 lncRNA downstream 144725 31760113 ~ 31761131 (-) True XLOC_010817
TCONS_00021161 lncRNA downstream 277699 31626494 ~ 31628157 (-) True XLOC_010809
TCONS_00021153 lncRNA downstream 394149 31508827 ~ 31511707 (-) True XLOC_010805
TCONS_00021190 lncRNA upstream 94538 32009238 ~ 32013499 (-) False XLOC_010827
TCONS_00021192 lncRNA upstream 95908 32010608 ~ 32013428 (-) True XLOC_010827
TCONS_00021193 lncRNA upstream 113379 32028079 ~ 32039063 (-) True XLOC_010828
TCONS_00022181 lncRNA upstream 128689 32043389 ~ 32049993 (-) True XLOC_010829
TCONS_00021206 lncRNA upstream 373096 32287796 ~ 32289736 (-) False XLOC_010837
TCONS_00021175 mRNA downstream 81331 31815244 ~ 31824525 (-) True XLOC_010819
TCONS_00021174 mRNA downstream 114691 31762712 ~ 31791165 (-) True XLOC_010818
TCONS_00021173 mRNA downstream 115571 31761825 ~ 31790285 (-) False XLOC_010818
TCONS_00021171 mRNA downstream 148893 31720042 ~ 31756963 (-) False XLOC_010816
TCONS_00021170 mRNA downstream 148893 31720042 ~ 31756963 (-) False XLOC_010816
TCONS_00021179 mRNA upstream 10234 31924934 ~ 31933740 (-) True XLOC_010823
TCONS_00021180 mRNA upstream 50640 31965340 ~ 31974482 (-) False XLOC_010824
TCONS_00021181 mRNA upstream 53673 31968373 ~ 31976269 (-) True XLOC_010824
TCONS_00021182 mRNA upstream 62993 31977693 ~ 31980948 (-) True XLOC_010825
TCONS_00021183 mRNA upstream 67383 31982083 ~ 31991377 (-) False XLOC_010826
TCONS_00021163 other downstream 254673 31646390 ~ 31651183 (-) True XLOC_010811
TCONS_00021159 other downstream 277169 31623975 ~ 31628687 (-) False XLOC_010809
TCONS_00021160 other downstream 277672 31626002 ~ 31628184 (-) False XLOC_010809
TCONS_00021143 other downstream 470836 31432847 ~ 31435020 (-) False XLOC_010803
TCONS_00021122 other downstream 1117311 30772319 ~ 30788545 (-) True XLOC_010792
TCONS_00021196 other upstream 201971 32116671 ~ 32119603 (-) True XLOC_010830
TCONS_00021197 other upstream 237499 32152199 ~ 32163795 (-) True XLOC_010831
TCONS_00021200 other upstream 284752 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021209 other upstream 659410 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021210 other upstream 715374 32630074 ~ 32649804 (-) False XLOC_010844

Expression Profile

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