RNA id: TU800105


Basic Information

Item Value
RNA id TU800105
length 4041
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G679371
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 147933 ~ 172066 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGAGACGCACGAGAGTGAGACTCGGCAAGGAAGTGCACTTAAAACTCGAGCAAGACAAAAGACACACTCCAAAACAATCCTGTGGACATTTTACAAACAGGATCTTACATGACAGCTGCTCTAAGGAAGCACATTCATCGAGAGTTTTAGAGGCATCGATTGTGTGATATTGGGATTGTACTTCTTTCTTTTTTTAACAACATTTTTAAATCTCTGGATATTTGAAAGTTTACCCTTCGTTTTGTTGTCTTCATCGTTAACATAATGCGCTAACGCGTTTATGCCTCAGCGGATATGTCTGACACGTCCAGAGGTATGGTTCGCCGAACATAGCCACCAGCCCGCGCAGACGGTAGGACCTGTTGAAGCCATGCGGCCAGAGATGGTGGTCGCTCGGGAGCTGCGGCGCATCGGAGACGAGTTTAACCGCCTGTACTGTCATGGGGCTGGTCCAGGCGGGAACAACGCGGCCCAGCTGCACGCTCCCAACGAACATCCCATCGTCGTGTGGATGAATGACGTCATTGCACGTCTAGTACAGTTTTTCCTGCGAAGAAGATGATTGACACATTGAATGCCCAGCAGACGTGTAGCAAACATGTAGCATCCCCCTCTCCTGACTGTATATTTGTAAATAAGGGATAACAGCAGTGCTGCTCATCCGCAACCTCTCCGGGTTTCGGCGTACAGTTTTGGACCTGTCGGGATGTGTGCAGATCTGGACGGATATATTAATTGGGAACCCTCGGCCATCCATAGACTGACTCACAGCAGAGTTTCCTGCGTTCACATGGAAAGCTGAGCCATTAGATGCTGTGTTGACGTGACAATTGTGGAGGTTTTTATTGCACCGTATGAACCCCATGCGGAGTGTGGAAACCGTGCCTTCATTGCCTGTTTGCCCTTGACATGCCTCTCCTTTCTTGTCTTCACCTATCTGTCTTTTTTTCTTCATGGCTTTTATATTTATTTTTCACTGTATTTAATTTGTACATCTTGTGTGTAATTTCATGAACGCGGACGTTAGTCGGTCAAGCGATGACATTATTGGTTCTGCCTGTCCTTCGCGTGTTTTTATTGGCTCCAGGTTTGCACTTGCGTTTGGTTTGCGTAGTCTATACAAATCGGATGAAATATAATATACTAATCCCATAACAGAAAATGAAGTTGATTTGAGACCAAAAACATCAACAATATATAGATATTTTACCTATTCTTTCAAAAACTGTTTGCATGATGAATGAACTTTCACCAGTCTTTCATGGATTTAACACTGGCTTCCGAGTTACACGTTACAAGCCAAATAATGAAAGACCTTTTCACATGACTCAAGTCAACATTTCCCAATAAACTGAACTCTTAAAAAGCTTGAACGCAGGTCAAACATTGTAACCTTTGGTACAAGGGGAAGGGACATTATAAAATGTAAAATCTGGCTCATGAATATTAATTAGGTGAGATGATGGCATTCACTCAGTAGTCTATATTGATTTGCTTAAAGGCAGACATTGGCAAGTAGGCACTAGTATAAGTTGTAGTTTGTCTGCCAAGTAAAAATGACAAAAATAAATAATGAATATTTCCCAAGAGATCGCAACCTTAAAGCACGGCTACATTTACCGTTGCTCTGTGAAATTTCGCAGGCGAAATCCAGTCATTTCAATACACGTTCGGGAGTTTCGTGTGATTGCGAAAAACCCGTGCAGATTTTATTCATGTTCAAGTTAGTCATGCAAATTAGCTGCTTCGACTGACAGAAAGCTGCTTGGTCTGAAAGTGACTTCTCTGTGAGCAACACTATTAACAATAGACTATAGATTTTTGCCTGCGAAATTTAGCTAACGTAACCGCACCTATAGAGTTATACCCGTTGATATGTCCTTACAGAGCCTCGCATATGACATGTAGGATAAAAAATCCCTCAATTTTCTGAATCGTGCGCACAATTTACTATTTTGTTTCCTCGATTTGCTAAATTGTGCGGACGATTTACTATTTCATTCCTGCGATTTGCTAAATTGTGCGGATGATTTGCTATTTCATTCTCGCGATTTGCTAAATTGTGCGGACGATTTACTATTTCATTCCCGCGATTTGCTAAATTGTGCGGATGATTTGCTATTTCATTCTCGCGATTTGCTAAATTGTGTGGATGATTTTACTATTTAATTACTGCGATTTGCTAAATTGTGCTCACTTTTTACTGTTTCATTCCCGCGATTTGCTAAATTGTGCGGATGATTTACTATTTCATTCCCGCTATTTGCTAAATTGTGCGCACAATTTACTATTTCATTCCCGCGATTTACTATTTCATTCCCGCGATTTGCTAAATTGTGCTCACGATTTACTATTTCATTCCCACGATTTGCTAAATTGTGCGAATGATTTGCTATTTCATTCTCGCGATTTGCTAAATTGTGCGGATGATTTTACTGTTTCATTCCCGCAATTTGCTAAATTGTGCTCACTTTTTACTATTTCAATCCCGCGATTTGCTAAATTGTGCGGATGATTTACTATTTCATTCCCGCGATTTGCTAAATTGTGCGCACGATTTACTTTTTTTTCTTGCATGTCATGTGTGGGGCTCCATAGTCCTTACCAATAATGTAACGTTTAAATTTCGAATAATTTTAACTCTCATCATCTCGTGTCATATACAACACAACGTCCTGAGCAGTGTATATACGTTTTACTTGTCATTTTCCGGTTATAGGCTCAAATGCACGTCAAGCCTCTTGTTTACTTTCACTTTATTCTGCTTCGCCAGTGCTCTGTCTGCAATGCTTTTCATGCAAAGGTCAAAGTGTGGCATTGTTTAGAGTCATGTGAAAAGGTCTTACGAACACCTTCAGGTACTAGAACAGTGTATGAATTTTTTTATGTAAGTGAATACCAGTCAAAATTAATCACATTGGACAGGCAAAGGTAGTGAGTATGTGTAACTAATATGGACGTATTTGTTATTTTAACGTCATAAACATTCAACATTTGGTATTTCGGTTTGTTTGATACCTTGTTTGGTCTTTATTAGAGATGGGAAATGTGAGCATAAGTGAAATTTTAATGATTCCATTAATGTTCCAACAGATTGTGCTTATGCCTAGTTTTGTGAATCTAGTTTAGGTCAAGGGGTTTTTATGTGGATTTTATCATTTAGTTAGTTGCTGTTGCAAACAGCTTTATCCCAAAGTGATCATACATGTGAAAAAACCTGCAATAAAGTGCCTTGCTCAATGGAGCAGGATTTTTTTATTATTACACCAAACTTGGGAATGAATTTGCAACCCTTAATAGTTAATTGCCCTTGTCCACTAGTAGTGCACACTTTTCAACACCAGCATTACCCCACTTCTAACAAACTGGCTTGACTAATTGACCTTTAACTAGCCTCAGGGACTAAGAGAAATACGCCGACGTAGATTTCTTGAACAAACCAGTCTTCCATCTTTATTTCGGTGTATTGGTTCTCTTCCTGGCTTTGCTTTTTATCACCATTGTCCCAGTATTCCAGTAAACAATGCACAAGGCTCAGGACGAGTCATCAAGTATGTTGGTATAATACTGTGTTTTATAGTTGCAAAGAATTAAGTAAATATGAACTGATGTGTTGACTACCTACCATGAAAGGTATTGCTGAAAGTTTAAGAAGTAAATATATAAGATCCGTCGGTTAGACGTTCCACGTGTGGAAGATGCATGGCCCTGTGTTATCATATGCATTTGTTTGTATGTCGGTTTTATAGTTTCTCTTTGCCAAAATGACAATTGTCTACCGTTCCAGGTTTACCACTCAAACCAAAGACCTCGTTTTTCAATGCTACTGGCATTGTGCGTTGTGTCATGCTCTATGTTTTCGTTCTCTGCCTTTGCTTAAGGATTCTAGCAGCATACTCTTTGATTCCAGAACAAACCTTTTTTTTCTGAGGGAAATCCATGAATTTCAGGCCAACCTGTGTATCTCCCACTGGACCTCTGACTGAGTCTTTTCAGTCCTGTTGCACTGAACACCCGCATCGCCCAATCTGACGCCACCCAGGACCCAGTACATTTGTAGCACAATGAAAATTTTTGTTTTTGTTTGTTTTGTCTGTTAAATGCATCTTTTTGTATTTTGCACTGAACTTGCTCTGTGCTCATTTGTGCAATACTGCTGTAAATAAAAGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800137 lncRNA downstream 8984 134117 ~ 138949 (-) True G679398
TU800161 lncRNA downstream 18822 126826 ~ 129111 (-) True G679422
TU800218 lncRNA downstream 23209 124489 ~ 124724 (-) True G679479
TU800217 lncRNA downstream 23703 123447 ~ 124230 (-) True G679478
TU800140 lncRNA downstream 24535 119706 ~ 123398 (-) True G679401
TU800115 lncRNA upstream 441 172507 ~ 174904 (-) False CI01180000_00174532_00175668
TU800116 lncRNA upstream 1751 173817 ~ 175173 (-) True CI01180000_00174532_00175668
TU800153 lncRNA upstream 15386 187452 ~ 187832 (-) True G679414
TU800130 lncRNA upstream 16873 188939 ~ 192585 (-) True G679391
TU800230 lncRNA upstream 78240 250306 ~ 250666 (-) True G679491
CI01180000_00087832_00089100.mRNA mRNA downstream 58813 87774 ~ 89120 (-) True CI01180000_00087832_00089100
CI01180000_00174532_00175668.mRNA mRNA upstream 456 172522 ~ 176762 (-) False CI01180000_00174532_00175668
CI01180000_00196890_00235102.mRNA mRNA upstream 24790 196856 ~ 235272 (-) True CI01180000_00196890_00235102
CI01180000_00326608_00354369.mRNA mRNA upstream 154413 326479 ~ 354369 (-) True CI01180000_00326608_00354369
CI01180000_00356767_00357401.mRNA mRNA upstream 184671 356737 ~ 357401 (-) False CI01180000_00356767_00357401
CI01180000_00365377_00365888.mRNA mRNA upstream 193109 365175 ~ 365888 (-) True CI01180000_00365377_00365888
TU800565 other upstream 997793 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 1606526 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 1606526 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 2444288 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 2598981 2771047 ~ 2851916 (-) True G680506

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU140438 False 3286 lncRNA 0.42 3 NC_056711.1 18957718 ~ 18975499 (-)