RNA id: CI01180000_00365377_00365888.mRNA


Basic Information

Item Value
RNA id CI01180000_00365377_00365888.mRNA
length 569
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01180000_00365377_00365888
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 365175 ~ 365888 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACAGTCTGTCATGTTTTTGTCAAGTACGGGGCTTGGGGGACTGGAGAAGAGGCTCACAAAAGCCATGATGGTTGGTAACGCAACTGGCCCTTCTCCGCAACCAGAGTTTGATACCCTCAGCTTTGTTTATGTCCCCGGCGGTTTCACAGATGACCTGGTGCGAGACTGCAGACGCAGAATATTGTGTTTACAATCGAAGGCTTTTTCGGGATCTTCCACAGACATGGCGCCCGCAACACTTTTCGTGAAAATGGCTGCGAGGATCTTGCAGAAGCTTGTGGTCCCGCCCAGTTTGCGAGTCGGAGCCAATCACTTGTTTTTCCGCCGTCGCGAAGCTGCATTGTCTCGCTCTACTATTGGCTGAAGCACTGGCGCCTAAGCGCGAGAGTAATTTTCTGTTGATCTATTGGTTGCTGAAGATGCCAATCATTTTGCTCACCGTACATGTTAGGATGACGCACTGTTTATGACTTTGTTAACGGGTTCTGTTTTTATCATTTTATTTAATCAACGATTCATTTTCTAAAGCACTAATAGCCGCTGTACATGTTTTGGAATTTAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800261 lncRNA downstream 3884 356344 ~ 361291 (-) True G679520
TU800276 lncRNA downstream 14203 349078 ~ 350972 (-) False G679533
TU800275 lncRNA downstream 14203 350724 ~ 350972 (-) True G679533
TU800113 lncRNA downstream 63848 299168 ~ 301327 (-) True G679376
TU800256 lncRNA downstream 70595 292972 ~ 294580 (-) True G679517
TU800307 lncRNA upstream 189802 555690 ~ 556058 (-) True G679556
TU800315 lncRNA upstream 202486 568374 ~ 568575 (-) True G679564
TU800320 lncRNA upstream 207314 573202 ~ 573824 (-) True G679569
TU800338 lncRNA upstream 274790 640678 ~ 641448 (-) True G679587
TU800355 lncRNA upstream 351458 717346 ~ 717762 (-) True G679603
CI01180000_00356767_00357401.mRNA mRNA downstream 7774 356737 ~ 357401 (-) False CI01180000_00356767_00357401
CI01180000_00326608_00354369.mRNA mRNA downstream 10806 326479 ~ 354369 (-) True CI01180000_00326608_00354369
CI01180000_00196890_00235102.mRNA mRNA downstream 129903 196856 ~ 235272 (-) True CI01180000_00196890_00235102
CI01180000_00174532_00175668.mRNA mRNA downstream 188413 172522 ~ 176762 (-) False CI01180000_00174532_00175668
CI01180000_00165666_00171227.mRNA mRNA downstream 193948 165423 ~ 171227 (-) False CI01180000_00165666_00171227
CI01180000_00377933_00385445.mRNA mRNA upstream 12029 377917 ~ 385445 (-) True CI01180000_00377933_00385445
CI01180000_00390297_00422803.mRNA mRNA upstream 24377 390265 ~ 422837 (-) True CI01180000_00390297_00422803
CI01180000_00455918_00461072.mRNA mRNA upstream 90000 455888 ~ 461072 (-) True CI01180000_00455918_00461072
CI01180000_00470482_00492406.mRNA mRNA upstream 104594 470482 ~ 492482 (-) True CI01180000_00470482_00492406
CI01180000_00507815_00529341.mRNA mRNA upstream 141927 507815 ~ 529341 (-) True CI01180000_00507815_00529341
TU800565 other upstream 803971 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 1412704 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 1412704 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 2250466 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 2405159 2771047 ~ 2851916 (-) True G680506

Expression Profile