RNA id: CI01180000_00326608_00354369.mRNA


Basic Information

Item Value
RNA id CI01180000_00326608_00354369.mRNA
length 1722
RNA type mRNA
GC content 0.55
exon number 9
gene id CI01180000_00326608_00354369
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 326479 ~ 354369 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTCGGATACAGGAGGATGAATTTATCATACACAGTTTTTCTCCTGCTAAACGTCTTATCACTGTACAACTGCAATGATGCGGCGCAAGGTTGTATGGATAAGCACCGAGTGATGGGCATCCTGCGTCAGATGGATAAGTTTCTTAAAGGACAGGAGATCCGATTCACCGAAGGGCTTCGGATTATGAAATCCAAGCTCACCAACCTTCAAAACTCAGTGTCCAAGTTCCCACAAGCAGACCAGTCCTCGTGCCAGTTCTCATGCCCACCTCTGGTGGCTCCGGCTCACGGCAGGAAGTTTGGCTCAAAAAACCTGGTGGGTCATGAGGTCCATTTCACATGTTCTCAGGGATATCGCTTGGTGGGGCCGGGGACACGCGTGTGCCAGGAGAACGGTACCTGGAGCGGAGTCAGCGCCGTCTGTAAAGGAGCTGTTGTAAACCTAACCGACCTCTCAACCGTTTACGATATGGGATGCAAACGGGGTGAATGTGACAGACGCCATGTGAGCGAACCGCAGGTTAGATGGGATGCTCAACTCTCCCTTCTCTCACCGCTCCTCCGTTTCACCGCTCCGTTGTTAACATTCCAGGAGATCGGTTTCATTTTACTGTGCCATTCTGTACAGGAAATAGGGAAGAATGTGGGCTCGTTTAATTCCTTCAACAATTCAGGTGTGAGTGTGTGCGGCAGTAACCCGTGTCAGAACGGCGGCACCTGTGTGGAGGCTCTTAACCAGTACAAGTGCACCTGTCCACACAACTGGAGCGGGAGTCAGTGTCAGTACCAGACGCAGACAGGCCCTCCGGAGTGGAGTGTCATGAATGACCCGGCTTTCAGCCGCAAGCCTCGCTGTGCAAAAGTGGACCGAGCCCAGCACTGCAGCTGTGACGCTGGCTTCCACATGAGCGGCACCTCCGACAACAGCATCTGTCAGGGTGTGAATGAATGTGAGGTGTATAAGGCTGACCGTGGAGGGCCTCTGTGTGGCCATGCCTGCGTAAACGTCCCGGGATCGTACCACTGCTCCTGTCCCACCGGATACAAGCTGCTCGCTGATGGAAGAAGCTGTGAGGGTGTGGATGAATGTCTTACACAACAGCACAACTGCAGCCGTGGCACCACCTGTATCAACACCGGAGGAGGTTTCCAGTGTGTTAACCCCGAGTGTCCGCGCTCGCACGGCAACGTCAGCTACGTCAAGACGTCACCTTTGCAGTGTGAAAGGAATCCCTGTCCGATGGAAAGCCGCTCCTGTCCGCTTGCTGCAAAGACCATTTCTTACCACTACCTGTCTCTGCCGTCCAACCTGCGCACACCGGCCACCCTGTTCCGCATGGCCACCGCAACCGCTCCGGGTCGGCCGGGTCCGGACAGCCTCCGCTTTGGCATCGCAGGCGGAGGTGACGCCCGGAGCATGTTCGTGATGCAGCGCTCGGACCGTCAGACCGGAGAGCTGATCCTCGTCCAACCCATGCGAGGCCCACAGGAGCTCAGCGTGGAGGTGGAGATGTCCGAGTACTCCGACCGCACCTTCCAAGCCAAACATCTGGCACGGGTCCACCTTCTGATTTCACCCTACGAGTTCTGAAGAGGCTGTTCGGTGTATGAATGTTTAGACTTAAAGAGGAAAGAATGTTTTCCTTATTGCTAAAGCTGAATGATAGAGTTGTTCTCAGAGGCGGCTCGGATTTTGATGTTGGGATGGCGCAAAAATAAAA

Function

GO: NA

KEGG:

id description
K17342 FBLN7; fibulin 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800113 lncRNA downstream 25152 299168 ~ 301327 (-) True G679376
TU800256 lncRNA downstream 31899 292972 ~ 294580 (-) True G679517
TU800238 lncRNA downstream 69110 257007 ~ 257369 (-) True G679499
TU800230 lncRNA downstream 75813 250306 ~ 250666 (-) True G679491
TU800130 lncRNA downstream 133894 188939 ~ 192585 (-) True G679391
TU800261 lncRNA upstream 1975 356344 ~ 361291 (-) True G679520
TU800307 lncRNA upstream 201321 555690 ~ 556058 (-) True G679556
TU800315 lncRNA upstream 214005 568374 ~ 568575 (-) True G679564
TU800320 lncRNA upstream 218833 573202 ~ 573824 (-) True G679569
TU800338 lncRNA upstream 286309 640678 ~ 641448 (-) True G679587
CI01180000_00196890_00235102.mRNA mRNA downstream 91207 196856 ~ 235272 (-) True CI01180000_00196890_00235102
CI01180000_00174532_00175668.mRNA mRNA downstream 149717 172522 ~ 176762 (-) False CI01180000_00174532_00175668
CI01180000_00165666_00171227.mRNA mRNA downstream 155252 165423 ~ 171227 (-) False CI01180000_00165666_00171227
CI01180000_00087832_00089100.mRNA mRNA downstream 237359 87774 ~ 89120 (-) True CI01180000_00087832_00089100
CI01180000_00356767_00357401.mRNA mRNA upstream 2368 356737 ~ 357401 (-) False CI01180000_00356767_00357401
CI01180000_00365377_00365888.mRNA mRNA upstream 10806 365175 ~ 365888 (-) True CI01180000_00365377_00365888
CI01180000_00377933_00385445.mRNA mRNA upstream 23548 377917 ~ 385445 (-) True CI01180000_00377933_00385445
CI01180000_00390297_00422803.mRNA mRNA upstream 35896 390265 ~ 422837 (-) True CI01180000_00390297_00422803
CI01180000_00455918_00461072.mRNA mRNA upstream 101519 455888 ~ 461072 (-) True CI01180000_00455918_00461072
TU800565 other upstream 815490 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 1424223 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 1424223 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 2261985 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 2416678 2771047 ~ 2851916 (-) True G680506

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013303 True 3198 mRNA 0.43 8 NC_007124.7 47750933 ~ 47800342 (-)