RNA id: CI01180000_00455918_00461072.mRNA


Basic Information

Item Value
RNA id CI01180000_00455918_00461072.mRNA
length 756
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01180000_00455918_00461072
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 455888 ~ 461072 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTTGTTGTCATGGGTGCACCTGGTTCTTACTACTGGACCGGAACAGTCAAAGTGTTTAACATGACATCCAATACTCTCTACAACCTTAATCAAGACGACCTGAGCCCTCAAAGATACAGTTACCTCGGTAATTCCTGCTTGGATGTTAATAACTACTTCAATATTGCGTGCTGTAGATCACAGTCCATCACAGATTTGTGTTTTACAGGGTATGCTGTGACCGCTGGTCACTTTTCCTCTCCAAACACCATTGATGTGGCAGCTGGTGCTCCTCAAGACAGTGGTGGTGGAAAAGTTTACATCTTCAGAATTGAGGGAACGTCTCTTGTGAAGACATTTCAAGCCTCAGGGAAAATGGTGGGCTCTTACTTTGGCTCCTCATTGTGTGCAGTTGACCTAAATGCGGACGGACTGTCGGACTTGCTGGTGGGAGCACCCATGCACAGCGAGATCCGGGATGAAGGCCAGGTTTCTGTTTACCTCAGCAGTGGTAATGGAGTAATGGAGGAAGTTGCGGTATTGAGCGGTGACAATGCATACAATGCTCATTTTGGAGAGTGTATCTCGTCTCTTGGGGACATTGATGACGATGGCTACCAAGGTGTTGCAATTGGAGCCCCTAAAGAGGACGACTATGGAGGAGCTGTTTACATCTATCATGGCGATGCCACAGGAATAGTTAACAAGTACTCAATGGTAATCAACCACATTCTGCTCAAGTGATTTGGTCAACTTTTTGTATTACTTATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800261 lncRNA downstream 94597 356344 ~ 361291 (-) True G679520
TU800276 lncRNA downstream 104916 349078 ~ 350972 (-) False G679533
TU800275 lncRNA downstream 104916 350724 ~ 350972 (-) True G679533
TU800113 lncRNA downstream 154561 299168 ~ 301327 (-) True G679376
TU800256 lncRNA downstream 161308 292972 ~ 294580 (-) True G679517
TU800307 lncRNA upstream 94618 555690 ~ 556058 (-) True G679556
TU800315 lncRNA upstream 107302 568374 ~ 568575 (-) True G679564
TU800320 lncRNA upstream 112130 573202 ~ 573824 (-) True G679569
TU800338 lncRNA upstream 179606 640678 ~ 641448 (-) True G679587
TU800355 lncRNA upstream 256274 717346 ~ 717762 (-) True G679603
CI01180000_00390297_00422803.mRNA mRNA downstream 33051 390265 ~ 422837 (-) True CI01180000_00390297_00422803
CI01180000_00377933_00385445.mRNA mRNA downstream 70443 377917 ~ 385445 (-) True CI01180000_00377933_00385445
CI01180000_00365377_00365888.mRNA mRNA downstream 90000 365175 ~ 365888 (-) True CI01180000_00365377_00365888
CI01180000_00356767_00357401.mRNA mRNA downstream 98487 356737 ~ 357401 (-) False CI01180000_00356767_00357401
CI01180000_00326608_00354369.mRNA mRNA downstream 101519 326479 ~ 354369 (-) True CI01180000_00326608_00354369
CI01180000_00470482_00492406.mRNA mRNA upstream 9410 470482 ~ 492482 (-) True CI01180000_00470482_00492406
CI01180000_00507815_00529341.mRNA mRNA upstream 46743 507815 ~ 529341 (-) True CI01180000_00507815_00529341
CI01180000_00584958_00620271.mRNA mRNA upstream 123546 584618 ~ 620876 (-) True CI01180000_00584958_00620271
CI01180000_00676567_00695049.mRNA mRNA upstream 214316 675388 ~ 695049 (-) True CI01180000_00676567_00695049
CI01180000_00882422_00889083.mRNA mRNA upstream 421342 882414 ~ 889378 (-) True CI01180000_00882422_00889083
TU800565 other upstream 708787 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 1317520 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 1317520 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 2155282 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 2309975 2771047 ~ 2851916 (-) True G680506

Expression Profile