RNA id: CI01180000_00470482_00492406.mRNA


Basic Information

Item Value
RNA id CI01180000_00470482_00492406.mRNA
length 731
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01180000_00470482_00492406
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 470482 ~ 492482 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTCTATAGACAGATTTAATTACTTTTATAAAGTTCTCATCAAATTGACTCCAGCACTGAGGATGCGAAACAGAATGACGGAACTTTCTACACGGAAAAGAAGCGCTTTGGATGTTTTTGTGTATTTGTGTTTTGTTTCCTTGGCTTATTCCTTCAACATTGACTTGAAACATCCTGTGGTGTTTCGGGGACCAGATGCGACGTTTTTTGGATATTCAGTCCTGGAGCACGTCCATGACAACACACGCTGGGCTCGAGCGCTCTTCGGTCGCCATGGATACCTCCTCAGGCAAATGTCTTCGTCTGTTGCGCCAGGATTGTGGTTGGGGCTCCCAGAGCAAACTCCTCTTACAGTAGTTCAGTTCAGTCACCCGGAGCCTTGTACAAGTGCCGAATCCGCAACAACCCAGAGCAACGCTGCACTGAGATGGACCTTGGCAGAGGCCGAGATGTTTGTTTATCTGTTGGCTACAGTAACATTCTCATTCTGTACTTTAGGAAATAAGCAGAAGGAGTCCTGCGGGAAGACGTGTCAAGGCGACAGGGACAACGAGTGGATGGGGGTCAGTTTGGCTCGACAGGACAAAACCAACGGCAAAATTCTGGCCTGCGCTCACCGCTGGAAGAATGTATATTATGAATCGGAGTATATTCTTCCCCACGGATACTGCTCCGTCATCCCAGCCACTCTGCAGGGCAAATCACAGCCTCTCATACCGTGTTATGAAGG

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG:

id description
K06585 ITGA9; integrin alpha 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800261 lncRNA downstream 109191 356344 ~ 361291 (-) True G679520
TU800276 lncRNA downstream 119510 349078 ~ 350972 (-) False G679533
TU800275 lncRNA downstream 119510 350724 ~ 350972 (-) True G679533
TU800113 lncRNA downstream 169155 299168 ~ 301327 (-) True G679376
TU800256 lncRNA downstream 175902 292972 ~ 294580 (-) True G679517
TU800307 lncRNA upstream 63208 555690 ~ 556058 (-) True G679556
TU800315 lncRNA upstream 75892 568374 ~ 568575 (-) True G679564
TU800320 lncRNA upstream 80720 573202 ~ 573824 (-) True G679569
TU800338 lncRNA upstream 148196 640678 ~ 641448 (-) True G679587
TU800355 lncRNA upstream 224864 717346 ~ 717762 (-) True G679603
CI01180000_00455918_00461072.mRNA mRNA downstream 9410 455888 ~ 461072 (-) True CI01180000_00455918_00461072
CI01180000_00390297_00422803.mRNA mRNA downstream 47645 390265 ~ 422837 (-) True CI01180000_00390297_00422803
CI01180000_00377933_00385445.mRNA mRNA downstream 85037 377917 ~ 385445 (-) True CI01180000_00377933_00385445
CI01180000_00365377_00365888.mRNA mRNA downstream 104594 365175 ~ 365888 (-) True CI01180000_00365377_00365888
CI01180000_00356767_00357401.mRNA mRNA downstream 113081 356737 ~ 357401 (-) False CI01180000_00356767_00357401
CI01180000_00507815_00529341.mRNA mRNA upstream 15333 507815 ~ 529341 (-) True CI01180000_00507815_00529341
CI01180000_00584958_00620271.mRNA mRNA upstream 92136 584618 ~ 620876 (-) True CI01180000_00584958_00620271
CI01180000_00676567_00695049.mRNA mRNA upstream 182906 675388 ~ 695049 (-) True CI01180000_00676567_00695049
CI01180000_00882422_00889083.mRNA mRNA upstream 389932 882414 ~ 889378 (-) True CI01180000_00882422_00889083
CI01180000_00891459_00895567.mRNA mRNA upstream 398714 891196 ~ 895580 (-) True CI01180000_00891459_00895567
TU800565 other upstream 677377 1169859 ~ 1170528 (-) True G679801
TU800690 other upstream 1286110 1778592 ~ 1781285 (-) False CI01180000_01776944_01781186
TU800691 other upstream 1286110 1781450 ~ 1781488 (-) True G679907
TU801392 other upstream 2123872 2616354 ~ 2616756 (-) True G680525
TU801369 other upstream 2278565 2771047 ~ 2851916 (-) True G680506

Expression Profile