RNA id: CI01180000_00250154_00256723.mRNA


Basic Information

Item Value
RNA id CI01180000_00250154_00256723.mRNA
length 3563
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01180000_00250154_00256723
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 250154 ~ 258668 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAATCTCTTTAACAATGGATTTCAAGAAATAGAAAGCCATGCCTTTAATGGAACTATAATCGATAAACGAGTATTAAAGAACAACAAAGATCTGCGTTTGATCCATGAAGATGCTTTCAAAAATGCGTTTGGCCCGACTTCGCGGGATGTTTCGTCAACAGCACTGGAGACGCTGCCCTCTCATGGTCTGGAGTCTGTGTTGATGCTGGTGGCTCGTTCAGCGTTCGCTCTGAAGAGACTGCCTCCACTGAAGGGACTGAAGAGCCTCAGAGACGCGCAGCTCACGTATCCCAGCCACTGCTGCGCTCTCCTCAGCTGGGACTCCTACAGGGAGGGTTCTGTTATTGCTGCATTGAGAAATGGATCATCATACTGTGATGACAACAGCCCACTGGATAGTCCATCTGAGATTGATGACTCTCTAATTCTGGACGGTCCTGTTGCTGCTGACATCGTTGGATCCACATCAGCAGAAGACACTTTTGGAAGTGTAGTGGAGTTCCAATACCCAGAGCTAGACCAGTGTCAGCGCCAACCAGCCCTGCAGTGCAGCCCCGAGGCCGACGCGTTCAACCCCTGCGAGGACATCGCCGGCTTCGGGTTCTTACGGGTGGCCATTTGGTTCATCAACGTCCTTGCCATCGCCGGCAACCTGACGGTACTGCTTGTGATATTTACAAGCCGCTGCAAACTGACCGTCCCGAGATTCCTCATGTGCCACCTGGCTATCGCCGACCTCTGCATCGGCGTGTATCTCCTTATGATCGCCACCGTGGACCTCAGGACACGCGGACACTACAGCGAGCATGCTATTGAGTGGCAAACGGGAGCGGGATGCGGCATCGCCGGGTTTCTGTCTGTATTCGGTGGTGAGTTGTCCGTCTACACACTGTCCACTATTACCGTCGAGCGCTGGCACACGATCACGCACGCTCTCCGGCTGGAACGCCGTCTGGGATTGAGCCACGCTTCTGCGATAATGGTCGCCGGATGGCTACTCTGTCTAGTGATGGCGCTGCTGCCCTTGATGGGCGTCAGCAGCTACAACAAGGTCAGCATGTGTTTGCCGATGGACATCGAGACGCCTTTATCCCAAGCCTACGTTATACTGCTGCTGCTTTTCAACGTCGGCGCTTTCCTGGTGATTTGCGGCTGCTACGTGTGCATCTACACGGCCGTCCGCAACCCAGAGTTCCCGGGACGCGCCGCCGACACCAAGATCGCCAAGCGCATGGCCGTGCTAATCTTCACAGACTTCCTGTGCATGGCGCCCATCTCGTTTTTCGCCATCTCCGCGGCCTTCAAAGTCCCGCTCATCACGGTGACCAACTCGAAGATCCTCCTGGTGCTCTTCTACCCCATCAACTCATGCGCCAACCCGTTCCTCTACGCCATCTTCACCAGGGCGTTCAGGAAAGACGCATGCATCCTGCTGAGCTCCATGGGCTGCTGCGAGAGCAAAGCCAACTTGTATCGAATGAAGACATACTGCTCGGAGAACATCAACCGAAGCAAAAGCAGCTCCGGCTCCAATGCGAACTCCAAAGCCCCTCGTGCCGTCATGTGGATGTCCAGCTTTCCCCATCTAACACCTCGACCGCAGATGCAACGGGTCTAGGGAAACAGAGACATTCAGACTCGTCTAATTTCTTGGTGTTCTGCCCTTGAACTTTAATGAATCTTATCTAAGAGACTCGGGGAAGATGGTGCCATTGCAACTCATTTTTACTCTTATCTCTCAATGCATTGACTTACAGTTCAGAAGACGCACAGGTCTTTTGAGAGAGAATGTAGCGCCCAAAGAGGCTATTGCTAATGGGTAAATGCACCAAAAAGCAGCAGGCCACTTTATGTCACAATTTCTACATGATCTTTCATTTTTACAGATATTGACTGTGAGGTGAACACTCTAAAAATGCTGGGTTGAAAACAACCAAAGTTGGGTTAAATGTGGACAAACCCAGCGTTTGGGTTGTGTTGAGTTTTAACTCAACTATTGTTTAAAAAATACAATATGGCTGGCTTAAACGGGACATATCATAAAAATCTGACTTTTTCCTTGTTTAAATGCTATAATTGGGTCCCCGGTGCATCTACCAACCCAGAAAATGTGAAAAAGGACAACCCAGTAACTTTGTTTTGGTAAGCCTTTCTCTGCAAGCATGTGAAAAAATGAGCCGCTCAGATTTTGCTCCCCTTGTGACGTATGAAGGGGATCTTATTATAATATTACCGCCCCTTAATCGGCACGTTTCCACCCACGGTGCCGCCATTTTGTTTTCGCAAGCGACAACGGTGTACCAGTTCTAACGCCATGGCAAAAGTTTGAGCAAAGCATGCTAACTGTTCTGTTGTTGTCTGCACAGGCGAGCACTGAACACTATTTAGAGTCTCGTTAGCTTGGATAGCCTGAAGTTGACCCTGACAAGCTCGATTTCTAAAAAAGTAGCATTTCTGTCCGAGCGATATTTTGGAAAAAATATTAGACCATTCACAGCATTTGATAGCAATCATAAACGTTAGCCTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAAAACTTTCGTTATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCTGTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCGGGAGCAGCAGCTCATTTGCATTTAAAGGAACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGAGACACCAGAGACATCTTGTGAAAAGGGGCATTATAGGTCCCCTTTAAAATGAAGCCAAAATAGGTTGGAAATTAAAAATCAGACACATAATTACTAGAGGCAACAATAAAAATCAAAAGGTGATAAGCAATTTAATAAATGTTTTATTATTATTTAATTATTATTTATTTAACTTATTAATCAATGTTTATTTATTAAGCATATTAATAAATGATAATTTCCAACCTATTTTGAGTAATATAGTAAATTTTAAACAATAGTTGGGTTAAATAAAACTACCCAGCATGTTGGTCAAACATTTAACTCAACTGCTGGGTCAGAACAAAACTGCTTTTAACCCAGCATTTTTTTTTTTTTTTAGAGTGAAGCATCAGTCTGGTCATTTTCAATGCATTTTAGCCTTTTGGTGTCAGAATTCAACCTTTTGCATAATTGCTGTAAAATAGTTTAATTTGTCAATGTAAGGCTTTTTAATGTGGACAAGAGTTTCCTTATTTAAATTATATAACTTAACTAGTTGCTATCGCTGATGTTTGAAGAACATATTCCAGAGCTGTTGTTTTACACCATGGAAGAGCGCCACCTTGTGGACAAATCCAGTTATTGTTTTGAAAAGATTACAAATGAAGGTCGTTTTTTTTTTTTTTTTTAATTATTATCATTACCATGTAGTATTTGAAGTCT

Function

GO:

id name namespace
GO:0009755 hormone-mediated signaling pathway biological_process

KEGG:

id description
K04248 LHCGR; lutropin-choriogonadotropic hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799144 lncRNA upstream 6443 243506 ~ 243711 (+) True G678499
TU799138 lncRNA upstream 14952 233616 ~ 235202 (+) True G678493
TU799134 lncRNA upstream 22422 226492 ~ 227732 (+) True G678490
TU799132 lncRNA upstream 26708 220048 ~ 223446 (+) True G678488
TU799121 lncRNA upstream 61601 188333 ~ 188553 (+) True G678477
TU799087 lncRNA downstream 40503 299171 ~ 301328 (+) True G678448
TU799153 lncRNA downstream 64081 322749 ~ 326978 (+) True G678508
TU799167 lncRNA downstream 93289 351957 ~ 444582 (+) True G678521
TU799075 lncRNA downstream 129173 387841 ~ 390386 (+) False G678444
TU799078 lncRNA downstream 129173 387841 ~ 390386 (+) True G678444
CI01180000_00105493_00124081.mRNA mRNA upstream 126071 105382 ~ 124083 (+) False CI01180000_00105493_00124081
CI01180000_00009241_00055691.mRNA mRNA upstream 194204 9241 ~ 55950 (+) True CI01180000_00009241_00055691
CI01180000_00263000_00297934.mRNA mRNA downstream 4332 263000 ~ 298466 (+) True CI01180000_00263000_00297934
CI01180000_00306160_00314770.mRNA mRNA downstream 47492 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00361420_00364335.mRNA mRNA downstream 102752 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00368639_00375465.mRNA mRNA downstream 109971 368639 ~ 376247 (+) True CI01180000_00368639_00375465
CI01180000_00427700_00437883.mRNA mRNA downstream 168982 427650 ~ 438466 (+) True CI01180000_00427700_00437883
TU799069 other upstream 98502 147934 ~ 151652 (+) True G678440
TU799410 other downstream 801175 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 890883 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 1259685 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1536502 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 2130199 2388867 ~ 2397360 (+) True G679324

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012255 True 3001 mRNA 0.47 11 NC_007124.7 47573405 ~ 47618847 (+)