RNA id: CI01180000_06532667_06556697.mRNA


Basic Information

Item Value
RNA id CI01180000_06532667_06556697.mRNA
length 2389
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01180000_06532667_06556697
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6532276 ~ 6557504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTTAAATATAGTCTATGTATTATACATTTTCATGAAATCTACAGAAGCACAGAATCCATTCCACAGCCTGAACGATTAACTCGACTAAAGAATCAGTGTTGGGGGTTTTAAAGGAGTGTTGTAGATCACTGTTTCTAGTGTTAGACTCCTTAAGAGAATTGATTTTGGGTCAGCTGTTGGGTATTTGATGTAGTCAGCTTCTCTTGACTGACATTACGTTGAACACCCCTGTCCATGGTGCTGAAACCTGTAGTTTGTTTCTTTTACAGATGTGACACCGCTTCTGCTGTAATAGACTCTACCTGCAATTTGAGGATTGTAATGTGAGTCCAGGTGCAGTCCCGTAATTTTATGCTGGTGGAGAGGAGTGAGATGCTTCACTCGGCTGCCATGACAACAGGACTTTTCTTTGTTACTTGGCTCTTGTATACAAGCGCACGAGGCAATCCCGTTGTGTCGGTGCCGGAGGGTGGGGAGAAAGAGCGTTTGGAGCGTGTTCTGACCCAGGCCAAGGAGGGTGCGCTGAGCCCTGGTGCAAGGCAGCGTTTGGAGGAGCTGAGTAATCTTGAATTGGAGGGGATCAAGGGCGTGAACAGATCTAGTGTTAGCAGGACCCGACCCAACTCGAGCCCCTTGAGACGAGGGTCCAAACTGCAGGGTAAGACCCTCGAAACCTGGGGTGAGCAAGAATCACTCAAGCAAACTGAAGAGACTCTTACAGAAGAGGCCAACACCTCCCTCGATGCGACCGATGAGTACGCGTATCCCGATTACAGGGGTAAGGGCTGCATGGACGAGACAGGGTTTGTGTTCGCCATCGGGGAGAAATTCACCCCAGGACCCTCCACCTGCCCCTGCTTGTGCACAGATGAAGGTCCTCTGTGTGCCCAACCAGAGTGTCCAAAACTTCATCCACGTTGCCTGCGTGTTGACACCAGCCAGTGCTGCCCGCAGTGCAAAGAGAAGAAAAACTACTGTGAATTTCGAGGAAAGGTCTACTCATCTCTGGAGGAGTTTAAGGTGTCTCCGTGCGAGAAGTGCCGTTGTGAGCCCAGTGGAGAGGTTTTGTGTTCCGTGTCTGCTTGCCCACAGACAGAGTGTGTTGATCCGGAATATGAGCCTGACCAGTGCTGCCCAGTGTGTAAGAGCGGAGGTGAGGTGATTAGCACAGGCAGGAAATATAGAAGTATAAGTTGGTGTTTGGGTGTGAGATGGAATCCAGGGAACAAAAGCAGGCCAATTTCATCAAGTCGTGCCGTTGTGAATTCAAACAGCTTTACAAATGTATGTGCACACTCAAGCAGTCAAGCAGTATGGTTTTATGATGGATTGGAAGCATTTTTGCTCAACGCACAAGATTACAGCCGCCTAGTGATTTCACCGCACGCCGTAATACCGCAACTCGGCTCGGCTCCGTTGCACTTGCCAGGCCCGAACTGCTATGCGGACACGGCGGTGATCCCGGCCGGCCGAGAGGTTAAGATCGACGAATGCACCATCTGCTACTGCACGTACGAGGAGGGCACCTGGCGTATCGAGCGGCAGGCCACCTGCAGCAAGAACGAGTGCCAGCCGAGCTAAGGCGGCGACGAGGGGCTCGAGACCCTCAGCCTTCACCCGGACAGCTGTGGATCTGGATCACCTGTCCCAGCTGTGGTCTGTACGGGCTCAGCACGGCAGCCCTGAGCCTCACACGCAGCCAAGACACCGGCACCGTGTGGCGTAACATCAATCACGGTCATTTGTGACCGTTCATGACTATGAACTCAGAGTGTCCCGTAGCATGCAGCGGACAGGCCAATTAACCTGGGAACAAGGCCAAGGGCCAGAGTGCGAAGCGCTACATTCCTCTCGCTACGACGGAGCCTCTGAGTTGGCATAGCGTCATGACGAGTGATGAGATTCATACGTTAGAGTTACATGTATAGTCTTAGGAGGCATGGAGTTGAATTCAACTATATTAATATTTCAAGTTTGTATTGAGATTTATAACCCATATAAAGGATATTTATTTATGTATGTGCTGGTTCAATGATTATGATTGGATTCAAATATCTGATTTACAGTGAAATGATATTTTTTATAGCCACTGTATTTTGATATGCCGTAACATTTAATACTGGATCGTCTTATTAGAATGTATAACGCACCTACAGCTGTCAATGTGTCTGGAGAAACGTTTTGTCAAAGACTAGATGATGCCGCTGACACATAACATCTAACGCAACGTCAGGATAGTCAACAGAGCAGAATGGATTTGATGTCCATTTGAGGAAATCAAAAACGGAAAGAAAGCTGCTTGCATTTATGTTAAGTCTCTATTGTGCTCTTATCTGAGATCCATTTTGCTAAGACGTGTTTCTATGTGTACGTGTTTTCATGTTCCA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802554 lncRNA upstream 53277 6471995 ~ 6478999 (+) False G681592
TU802548 lncRNA upstream 57492 6471995 ~ 6474784 (+) False G681592
TU802546 lncRNA upstream 65052 6442303 ~ 6467224 (+) False G681591
TU802659 lncRNA downstream 72321 6629825 ~ 6630063 (+) True G681682
TU802660 lncRNA downstream 72826 6630330 ~ 6630546 (+) True G681683
TU802662 lncRNA downstream 74149 6631653 ~ 6631929 (+) True G681685
TU802648 lncRNA downstream 87604 6645108 ~ 6645323 (+) True G681674
TU802626 lncRNA downstream 87938 6645442 ~ 6646838 (+) True G681652
CI01180000_06503211_06517041.mRNA mRNA upstream 15174 6503211 ~ 6517102 (+) True CI01180000_06503211_06517041
CI01180000_06369051_06375352.mRNA mRNA upstream 155023 6368381 ~ 6377253 (+) True CI01180000_06369051_06375352
CI01180000_06183820_06187700.mRNA mRNA upstream 344375 6182149 ~ 6187901 (+) True CI01180000_06183820_06187700
CI01180000_06060886_06073483.mRNA mRNA upstream 458054 6059381 ~ 6074222 (+) True CI01180000_06060886_06073483
CI01180000_05928275_05933064.mRNA mRNA upstream 599024 5928275 ~ 5933252 (+) False CI01180000_05928275_05933064
CI01180000_06581704_06589445.mRNA mRNA downstream 23486 6580990 ~ 6589481 (+) True CI01180000_06581704_06589445
CI01180000_06608734_06626459.mRNA mRNA downstream 51230 6608734 ~ 6626812 (+) True CI01180000_06608734_06626459
CI01180000_06638215_06643427.mRNA mRNA downstream 80305 6637809 ~ 6643820 (+) True CI01180000_06638215_06643427
CI01180000_06704767_06711402.mRNA mRNA downstream 147263 6704767 ~ 6712156 (+) True CI01180000_06704767_06711402
CI01180000_06714748_06715005.mRNA mRNA downstream 157101 6714605 ~ 6715107 (+) True CI01180000_06714748_06715005
TU802553 other upstream 53277 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 1158514 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 1746645 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 2747835 3765691 ~ 3784441 (+) True G680736
TU801630 other upstream 2959879 3553562 ~ 3563250 (+) True G680723
TU802663 other downstream 75404 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 98342 6655846 ~ 6659546 (+) True G681667
TU802812 other downstream 845643 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 1105919 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 1136819 7694323 ~ 7694381 (+) True G681822

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012654 True 1226 mRNA 0.51 4 NC_007124.7 16150654 ~ 16191674 (-)