RNA id: TU799069


Basic Information

Item Value
RNA id TU799069
length 3634
RNA type TUCP
GC content 0.39
exon number 2
gene id G678440
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 147934 ~ 151652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCTTTTATTTACAGCAGTATTGCACAAATGAGCACAGAGCAAGTTCAGTGCAAAATACAAAAAGATGCATTTAACAGACAAAACAAACAAAAACAAAAATTTTCATTGTGCTACAAATGTACTGGGTCCTGGGTGGCGTCAGATTGGGCGATGCGGGTGTTCAGTGCAACAGGACTGAAAAGACTCAGTCAGAGGTCCAGTGGGAGATACACAGGTTGGCCTGAAATTCATGGATTTCCCTCAGAAAAAAAAGGTTTGTTCTGGAATCAAAGAGTATGCTGCTAGAATCCTTAAGCAAAGGCAGAGAACGAAAACATAGAGCATGACACAACGCACAATGCCAGTAGCATTGAAAAACGAGGTCTTTGGTTTGAGTGGTAAACCTGGAACGGTAGACAATTGTCATTTTGGCAAAGAGAAACTATAAAACCGACATACAAACAAATGCATATGATAACACAGGGCCATGCATCTTCCACACGTGGAACGTCTAACCGACGGATCTTATATATTTACTTCTTAAACTTTCAGCAATACCTTTCATGGTAGGTAGTCAACACATCAGTTCATATTTACTTAATTCTTTGCAACTATAAAACACAGTATTATACCAACATACTTGATGACTCGTCCTGAGCCTTGTGCATTGTTTACTGGAATACTGGGACAATGGTGATAAAAAGCAAAGCCAGGAAGAGAACCAATACACCGAAATAAAGATGGAAGACTGGTTTGTTCAAGAAATCTACGTCGGCGTATTTCTCTTAGTCCCTGAGGCTAGTTAAAGGTCAATTAGTCAAGCCAGTTTGTTAGAAGTGGGGTAATGCTGGTGTTGAAAAGTGTGCACTACTAGTGGACAAGGGCAATTAACTATTAAGGGTTGCAAATTCATTCCCAAGTTTGGTGTAATAATAAAAAAATCCTGCTCCATTGAGCAAGGCACTTTATTGCAGGTTTTTTCACATGTATGATCACTTTGGGATAAAGCTGTTTGCAACAGCAACTAACTAAATGATAAAATCCACATAAAAACCCCTTGACCTAAACTAGATTCACAAAACTAGGCATAAGCACAATCTGTTGGAACATTAATGGAATCATTAAAATTTCACTTATGCTCACATTTCCCATCTCTAATAAAGACCAAACAAGGTATCAAACAAACCGAAATACCAAATGTTGAATGTTTATGACGTTAAAATAACAAATACGTCCATATTAGTTACACATACTCACTACCTTTGCCTGTCCAATGTGATTAATTTTGACTGGTATTCACTTACATAAAAAAATTCATACACTGTTCTAGTACCTGAAGGTGTTCGTAAGACCTTTTCACATGACTCTAAACAATGCCACACTTTGACCTTTGCATGAAAAGCATTGCAGACAGAGCACTGGCGAAGCAGAATAAAGTGAAAGTAAACAAGAGGCTTGACGTGCATTTGAGCCTATAACCGGAAAATGACAAGTAAAACGTATATACACTGCTCAGGACGTTGTGTTGTATATGACACGAGATGATGAGAGTTAAAATTATTCGAAATTTAAACGTTACATTATTGGTAAGGACTATGGAGCCCCACACATGACATGCAAGAAAAAAAAGTAAATCGTGCGCACAATTTAGCAAATCGCGGGAATGAAATATAAAATCATCCGCACAATTTAGCAAATCGCGAGAATGAAATAGCAAATCATTCGCACAATTTAGCAAATCGTGGGAATGAAATAGTAAATCGTGAGCACAATTTAGCAAATCGCGGGAATGAAATAGTAAATCGCGGGAATGAAATAGTAAATTGTGCGCACAATTTAGCAAATAGCGGGAATGAAATAGTAAATCATCCGCACAATTTAGCAAATCGCGGGAATGAAACAGTAAAAAGTGAGCACAATTTAGCAAATCGCAGTAATTAAATAGTAAAATCATCCACACAATTTAGCAAATCGCGAGAATGAAATAGCAAATCATCCGCACAATTTAGCAAATCGCGGGAATGAAATAGTAAATCGTCCGCACAATTTAGCAAATCGCGAGAATGAAATAGCAAATCATCCGCACAATTTAGCAAATCGCAGGAATGAAATAGTAAATCGTCCGCACAATTTAGCAAATCGAGGAAACAAAATAGTAAATTGTGCGCACGATTCAGAAAATTGAGGGATTTTTTATCCTACATGTCATATGCGAGGCTCTGTAAGGACATATCAACGGGTATAACTCTATAGGTGCGGTTACGTTAGCTAAATTTCGCAGGCAAAAATCTATAGTCTATTGTTAATAGTGTTGCTCACAGAGAAGTCACTTTCAGACCAAGCAGCTTTCTGTCAGTCGAAGCAGCTAATTTGCATGACTAACTTGAACATGAATAAAATCTGCACGGGTTTTTCGCAATCACACGAAACTCCCGAACGTGTATTGAAATGACTGGATTTCGCCTGCGAAATTTCACAGAGCAACGGTAAATGTAGCCGTGCTTTAAGGTTGCGATCTCTTGGGAAATATTCATTATTTATTTTTGTCATTTTTACTTGGCAGACAAACTACAACTTATACTAGTGCCTACTTGCCAATGTCTGCCTTTAAGCAAATCAATATAGACTACTGAGTGAATGCCATCATCTCACCTAATTAATATTCATGAGCCAGATTTTACATTTTATAATGTCCCTTCCCCTTGTACCAAAGGTTACAATGTTTGACCTGCGTTCAAGCTTTTTAAGAGTTCAGTTTATTGGGAAATGTTGACTTGAGTCATGTGAAAAGGTCTTTCATTATTTGGCTTGTAACGTGTAACTCGGAAGCCAGTGTTAAATCCATGAAAGACTGGTGAAAGTTCATTCATCATGCAAACAGTTTTTGAAAGAATAGGTAAAATATCTATATATTGTTGATGTTTTTGGTCTCAAATCAACTTCATTTTCTGTTATGGGATTAGTATATTATATTTCATCCGATTTGTATAGACTACGCAAACCAAACGCAAGTGCAAACCTGGAGCCAATAAAAACACGCGAAGGACAGGCAGAACCAATAATGTCATCGCTTGACCGACTAACGTCCGCGTTCATGAAATTACACACAAGATGTACAAATTAAATACAGTGAAAAATAAATATAAAAGCCATGAAGAAAAAAAGACAGATAGGTGAAGACAAGAAAGGAGAGGCATGTCAAGGGCAAACAGGCAATGAAGGCACGGTTTCCACACTCCGCATGGGGTTCATACGGTGCAATAAAAACCTCCACAATTGTCACGTCAACACAGCATCTAATGGCTCAGCTTTCCATGTGAACGCAGGAAACTCTGCTGTGAGTCAGTCTATGGATGGCCGAGGGTTCCCAATTAATATATCCGTCCAGATCTGCACACATCCCGACAGGTCCAAAACTGTACGCCGAAACCCGGAGAGGTTGCGGATGAGCAGCACTGCTGTTATCCCTTATTTACAAATATACAGTCAGGAGAGGGGGATGCTACATGTTTGCTACACGTCTGCTGGGCATTCAATGTGTCAATCATCTTCTTCGCAGGAAAAACTGTACTAGACGTGCAATGACGTCATTCATCCACACGACGATGGGATGTTCGTTGGGAGCGTGCAGCTGGGCCGCGTTGTTCCCGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799099 lncRNA upstream 9204 132800 ~ 138730 (+) True G678455
TU799098 lncRNA upstream 28976 113772 ~ 118958 (+) True G678454
TU799085 lncRNA upstream 36918 66915 ~ 111016 (+) True G678447
TU799084 lncRNA upstream 38225 66915 ~ 109709 (+) False G678447
TU799096 lncRNA upstream 41572 63236 ~ 63615 (+) True G678452
TU799083 lncRNA downstream 22159 173811 ~ 174711 (+) True G678446
TU799116 lncRNA downstream 28896 180548 ~ 180803 (+) True G678472
TU799121 lncRNA downstream 36681 188333 ~ 188553 (+) True G678477
TU799132 lncRNA downstream 68396 220048 ~ 223446 (+) True G678488
TU799134 lncRNA downstream 74840 226492 ~ 227732 (+) True G678490
CI01180000_00105493_00124081.mRNA mRNA upstream 23851 105382 ~ 124083 (+) False CI01180000_00105493_00124081
CI01180000_00009241_00055691.mRNA mRNA upstream 91984 9241 ~ 55950 (+) True CI01180000_00009241_00055691
CI01180000_00250154_00256723.mRNA mRNA downstream 98502 250154 ~ 258668 (+) True CI01180000_00250154_00256723
CI01180000_00263000_00297934.mRNA mRNA downstream 111348 263000 ~ 298466 (+) True CI01180000_00263000_00297934
CI01180000_00306160_00314770.mRNA mRNA downstream 154508 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00361420_00364335.mRNA mRNA downstream 209768 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00368639_00375465.mRNA mRNA downstream 216987 368639 ~ 376247 (+) True CI01180000_00368639_00375465
TU799410 other downstream 908191 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 997899 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 1366701 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1643518 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 2237215 2388867 ~ 2397360 (+) True G679324

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013683 True 6392 lncRNA 0.35 2 NC_007124.7 47353962 ~ 47361276 (+)