RNA id: TU799116


Basic Information

Item Value
RNA id TU799116
length 256
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G678472
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 180548 ~ 180803 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTTGTTGTAGTAGAGTGTTGTTGACATTCCGTCATTTTATGCCGGACTGCTTCACAAACGAGGGTCAATTCAACACAAAAGATTAACATGACGGCACATGCTAGTGGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCGACTCCGGTTTGAACAATGTAAGGCTGAAAACTTTCATCATTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799083 lncRNA upstream 5837 173811 ~ 174711 (+) True G678446
TU799099 lncRNA upstream 41818 132800 ~ 138730 (+) True G678455
TU799098 lncRNA upstream 61590 113772 ~ 118958 (+) True G678454
TU799085 lncRNA upstream 69532 66915 ~ 111016 (+) True G678447
TU799084 lncRNA upstream 70839 66915 ~ 109709 (+) False G678447
TU799121 lncRNA downstream 7530 188333 ~ 188553 (+) True G678477
TU799132 lncRNA downstream 39245 220048 ~ 223446 (+) True G678488
TU799134 lncRNA downstream 45689 226492 ~ 227732 (+) True G678490
TU799138 lncRNA downstream 52813 233616 ~ 235202 (+) True G678493
TU799144 lncRNA downstream 62703 243506 ~ 243711 (+) True G678499
CI01180000_00105493_00124081.mRNA mRNA upstream 56465 105382 ~ 124083 (+) False CI01180000_00105493_00124081
CI01180000_00009241_00055691.mRNA mRNA upstream 124598 9241 ~ 55950 (+) True CI01180000_00009241_00055691
CI01180000_00250154_00256723.mRNA mRNA downstream 69351 250154 ~ 258668 (+) True CI01180000_00250154_00256723
CI01180000_00263000_00297934.mRNA mRNA downstream 82197 263000 ~ 298466 (+) True CI01180000_00263000_00297934
CI01180000_00306160_00314770.mRNA mRNA downstream 125357 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00361420_00364335.mRNA mRNA downstream 180617 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00368639_00375465.mRNA mRNA downstream 187836 368639 ~ 376247 (+) True CI01180000_00368639_00375465
TU799069 other upstream 28896 147934 ~ 151652 (+) True G678440
TU799410 other downstream 879040 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 968748 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 1337550 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1614367 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 2208064 2388867 ~ 2397360 (+) True G679324

Expression Profile