RNA id: TU799134



Basic Information


Item Value
RNA id TU799134
length 1189
lncRNA type intronic
GC content 0.31
exon number 2
gene id G678490
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 226492 ~ 227732 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGTTACACAGATCCCGGGTCAGACGTAACAACCCAGTGTTTGGGTAGTTTTTGTGTTACTCAGATCCTGGGTCAGACGTAACAACCCAGTGTTTGGGTAGTTTTTGTGTTACCCAGATCTTGGATTTAAGTTAATCCGTAAACATTAATTCATGTATGAAGTAAAAAAAGGAAAAAAGCTAGCATTATAGTAAAAATGAATCAACCCATTATGCTGGGTTAAATAAACAACCCAATTTGCTGGGGTAAAATCAACCCAACATGTGTTCTGTGCTATATTTACCCAGCCCTTGGGTTGTTGTTAACCCAGTGTTCCTGCATTCACACACACACACAGATTTTTTAACATCCTACCTGTGACTGTAGCGTACTGCGATGACGAGCCCCAGCTGTACAGAAAGCACAGATTTAGCACAATGTGTGAAGGTGATTTTTATGAAAACAAGTCAATAAGAAATGGTTTAAATATTCTGAAGAAGTGGCTCTCAACCACTAGGGATCGAGACAGTGATTTAAAATGCTTTAAAATAAGGCAAAACATCTAAAACCCAAAATGTAAGATCATGTCAAATTTCTTATTTTAATTCATTCCCTCAACTCCTGACATTATATTTTAAGAACCAGGGTTCCGACAGACTTTTAAAAGAGGAATTTTAAAAGTGTGATTCTACACCTGGAAAGTCATGAAAGTTAGGAAAATCATGTACATTTCTATAACAAATATACATTTTTCTAGTTATTGTCAAGCTTTAAAATATTTTATTGGGTAGAAATTGCTATTTGTGAGTAAAAAGTCACAAATGACTAAAAAAGTTATGTAAATTCATTAATAATAAAATGTAAACCCTGAAAAACATTAAGTTATTGAAACTGATTCTGTAATTATTTTAATTATTTATTCATATTTTATATAATTCATTTAAGTAAATGTTATTCTAAATATAATTTAGAATATTTATATTGCCATTCCTAGTTTATGTAATATGTATTAGCAGCTTTTTCTTTACAGTAGCCATACTGTACCAAAATATCTGGGGGGAGGGGCTTTAAATATTATCTTAAAATATAAATATTAGATGAAAAACATAAAAAACAAAAAATTTGAAATCTTGCCTTGCAACTAACTGAAGTAAATGTTGAAGTACTAAAAATAAGTACATAAGAAAATTGCAAAAACATAAACTAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU799132 lncRNA upstream 3046 220048 ~ 223446 (+) True G678488
TU799121 lncRNA upstream 37939 188333 ~ 188553 (+) True G678477
TU799116 lncRNA upstream 45689 180548 ~ 180803 (+) True G678472
TU799083 lncRNA upstream 51781 173811 ~ 174711 (+) True G678446
TU799099 lncRNA upstream 87762 132800 ~ 138730 (+) True G678455
TU799138 lncRNA downstream 5884 233616 ~ 235202 (+) True G678493
TU799144 lncRNA downstream 15774 243506 ~ 243711 (+) True G678499
TU799146 lncRNA downstream 22953 250685 ~ 250913 (+) True G678501
TU799087 lncRNA downstream 71439 299171 ~ 301328 (+) True G678448
TU799153 lncRNA downstream 95017 322749 ~ 326978 (+) True G678508
CI01180000_00105493_00124081.mRNA mRNA upstream 102409 105382 ~ 124083 (+) False CI01180000_00105493_00124081
CI01180000_00009241_00055691.mRNA mRNA upstream 170542 9241 ~ 55950 (+) True CI01180000_00009241_00055691
CI01180000_00250154_00256723.mRNA mRNA downstream 22422 250154 ~ 258668 (+) True CI01180000_00250154_00256723
CI01180000_00263000_00297934.mRNA mRNA downstream 35268 263000 ~ 298466 (+) True CI01180000_00263000_00297934
CI01180000_00306160_00314770.mRNA mRNA downstream 78428 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00361420_00364335.mRNA mRNA downstream 133688 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00368639_00375465.mRNA mRNA downstream 140907 368639 ~ 376247 (+) True CI01180000_00368639_00375465
TU799069 other upstream 74840 147934 ~ 151652 (+) True G678440
TU799410 other downstream 832111 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 921819 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 1290621 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1567438 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 2161135 2388867 ~ 2397360 (+) True G679324

Expression Profile