RNA id: TU802470


Basic Information

Item Value
RNA id TU802470
length 450
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G681521
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6207092 ~ 6208009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGCTGAAGTATTCTTGGCCACTCCTTACCTTGGGAATTAGCCTGCAAGACCCCAATGCTGTCATCAAACTGCATAGATTTGATGTTAAGAGACGCCAAGATGCATTCCTTGTCCTGCAGTGAAGCATCGTCGATATTGTTCTGATTGGCTGACAGGATAACGCACATGTCGCAGAGGTTGATGTTGACGGCCCTTAAATCAGCTCGACTTAATGGCGTACCAGGTAAGATGGAGACTTTAGGGAAGTTGTGAAGGGTTTCCCACTCTCTTCTTAGATAATCTAACGAGCCCACAAACACAATGGGCTTTAGCTCATGGTAATGGAAGTTGCTTGCTCTTAAAGGCATCACCAAGTTTCGAAGCCCCACTAAAGCTGACGTGACATCTCCGAATATACAGACTACTACATGTCCACTTAAAACCGTCATGGAGGCCTCACTGCGTGTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802455 lncRNA upstream 27171 6179672 ~ 6179921 (+) True G681506
TU802171 lncRNA upstream 255218 5927417 ~ 5951874 (+) True G681237
TU802407 lncRNA upstream 360210 5846662 ~ 5846882 (+) True G681459
TU802399 lncRNA upstream 376001 5830647 ~ 5831091 (+) True G681451
TU802388 lncRNA upstream 404169 5802712 ~ 5802923 (+) True G681440
TU802487 lncRNA downstream 50800 6258809 ~ 6262932 (+) True G681537
TU802491 lncRNA downstream 62141 6270150 ~ 6383813 (+) True G681540
TU802568 lncRNA downstream 189509 6397518 ~ 6403932 (+) True G681606
TU802546 lncRNA downstream 234294 6442303 ~ 6467224 (+) False G681591
TU802543 lncRNA downstream 255719 6463728 ~ 6467224 (+) False G681591
CI01180000_06183820_06187700.mRNA mRNA upstream 19191 6182149 ~ 6187901 (+) True CI01180000_06183820_06187700
CI01180000_06060886_06073483.mRNA mRNA upstream 132870 6059381 ~ 6074222 (+) True CI01180000_06060886_06073483
CI01180000_05928275_05933064.mRNA mRNA upstream 273840 5928275 ~ 5933252 (+) False CI01180000_05928275_05933064
CI01180000_05919195_05919836.mRNA mRNA upstream 286645 5918105 ~ 5920447 (+) True CI01180000_05919195_05919836
CI01180000_05875768_05878028.mRNA mRNA upstream 328373 5875069 ~ 5878719 (+) True CI01180000_05875768_05878028
CI01180000_06369051_06375352.mRNA mRNA downstream 160372 6368381 ~ 6377253 (+) True CI01180000_06369051_06375352
CI01180000_06503211_06517041.mRNA mRNA downstream 295202 6503211 ~ 6517102 (+) True CI01180000_06503211_06517041
CI01180000_06532667_06556697.mRNA mRNA downstream 324267 6532276 ~ 6557504 (+) True CI01180000_06532667_06556697
CI01180000_06581704_06589445.mRNA mRNA downstream 372981 6580990 ~ 6589481 (+) True CI01180000_06581704_06589445
CI01180000_06608734_06626459.mRNA mRNA downstream 400725 6608734 ~ 6626812 (+) True CI01180000_06608734_06626459
TU802202 other upstream 833330 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 1421461 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 2422651 3765691 ~ 3784441 (+) True G680736
TU801631 other upstream 2634695 3553277 ~ 3563250 (+) False G680723
TU802553 other downstream 265026 6473035 ~ 6478999 (+) True G681592
TU802663 other downstream 424899 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 447837 6655846 ~ 6659546 (+) True G681667
TU802812 other downstream 1195138 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 1455414 7663423 ~ 7694381 (+) True G681822

Expression Profile