RNA id: TU802491


Basic Information

Item Value
RNA id TU802491
length 2954
lncRNA type read_through
GC content 0.42
exon number 7
gene id G681540
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6270150 ~ 6383813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTTTTCTTAAGGTGTGCCTTTAGCCCCATTGTACCCTATAATTTATTTATCTTTTTTAACTAAACTACACTTTTTTTTTAAAAACTAAACTTAAGAAATGCAATATAGCAGTTTGAAACTGTAAACTGATCAAATGTACAGCAAAAATCTAGCTAAAGCTACCAATCCCAGCTGCTTATCTCTTATTTATTTGCCGAAGTTTTAACAAAAACCTCTTGCTAAGCATACACATCTAGTCTTCATCTGTGTTAATGCTATGTATATTTTTCTGTATCACCATCTGAAGTTGCTCTGGTATAAATGCACTCTTTGAGTGTTTGTGGCTGCTGTTGCTATGGAAACGCTCAAGCAGGACTATGGGCCATCCGCCTGCCACTGTGTTTGTTGGAATTTGGGGAGGGAAACAGAAGGATGGGATCTCCTGAAACCGCAAAACTGTTTTAAGAGAATAGCAACATTATCATCGTCAAAATACATTTCTTTAAAGACTATTTTAAATGTAATAAACATGAGTGGTAGTGTCATACAGCATTTACAAGAATTTACACAATACATGTACATTTCATCTTAACTTGGGCTGTAATGTTAAAACAAGGTAATGGATTTTAAAGGCAAGGATGCAAACATTACAAAGACAGTGGACGTATACAATATGGTAAAAACAGCGTTATAATTTGGGCCGTTATGAAGACTGTGGAAAGACGACAGTTATGAGAGTCATATCACAGGAGTTGTCTTATTTTTACATGGTAGTTGGAGCAAGGCGTTTGCATGGGGTAGGGGAAGGGGTGCAGGAGGGGTGCATCGAGTGCCAACAAGAGGAAAAGTGTTTTTACCAGACCACCAAGAATGAAGAAGACCATGAAAAGGCGTCCAAGAGTGGTTCTTGCATAGACGTCTCCATATCCCACAGTGGACATAGTGACCATTAATAAGTACACACATTCCCAATATGAGAGCGGTTGAGAGTTTTGAAAGTTTTCCCATGGATCCCCTGAGTTTTCCACCTGCAGTGGAGAGGAGAGCGAAGAGAAAATTACTGACGGATCAAAACGTGATCCTCTACAGCCATCTACTGTCCATAGAGAAAATCACAAAAATGAATTGTGAGAGCAACCAAACTGAGGATTTAGTGGCGATCAGAGTCTCTGCTGCCATCTAGTGGCACAGATGTCCTCTGGCACATCCTGATAAAAATAAAAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACGAAAAAAGGAACAACAAAACACCAAATCTTTAGATAAACTACAACACAAACCATATACGCCACAAAGGGACAGACGTGACGCTCGCTTAGGAGCTTTTTCCTCCCACGAATCTGCACGTGCACTCCTTTCTTTGACTGTTTCTCCAGGGGCATGGGGAAAGGGGGGCGTGTGTGTGTTTTTTCACTCACCAGATGAATGAATCCTGCAGCAGTGAGCCATGTGCTTATGAAGATGGAACACAGGTTCACCAGCTTGATGGAATTACTTGTCTTTAAGATATTCAAAAACTGTAAAATTTCTGAGAATTGTATCAATCTCAAGGCTCTTAGAAACCTCAGACCGAGCCAGCTCCTGTTCAGATAAACTGACACAAACACGGGCGGTACGGTGAAGAAGTCCACCACTGAGTTCACCTCCAACCAGAACCACAGCTTATCATTGGCTGCTATGAAACGCAGGCCAAAGTAGAGTAAGAAGAACACATTGAATGCCATGTCAATTTGTAACGTGAAGTCTTTGTAGAAATTCTGACAGGATTCTATAGGATCCGAAGAATCTATGAAGTATATTCCCAGAGCTCCGATGCTGAGTGCAAAGACCAACACCACCAGAACTCTGCCGGTAAGGGTCTGTGCTGAGATCATGACCCCCGCCCAGTCTTTGACGGAAGTCATCCAGCCCACCTCACTGGCTGGGGCCTCATCTTTATCATTCAGGATCTTCGGTGGGCCATCAGCCTGACTGTTCATAGGATTATTCACCTTCTGTGCCTCCTTGGTTTTGATGTTGCAGTGGCAGCAGACAGTCCACAGGTACTTGAGGGTCCTCCACAGGAGGATGATGAAGAGACCCCCGAAGAACGTCACCATGGATGAGGCGAGGAAAGCCCACCACATGCGCTGACCATTGTTGTCACAGGGTACGTCTGGTGAGAATGGAATGATCACGTCCATCTTCGATATAGAGACAGAAGAGTCCGGATTTTTATTAAAATTGATATTATTACTCATTCTACAGCTGCTGCCATAGGATCCGTTGCCATCTGCCACAGCTAGCATTGAGAAGAAGCTTTGGACAGCTCCTGCCAGCGCCCCCAACCCCAGCCATCAGCCATATTGCTTCAAATATCCCTCTCCTTTCTTCTCTCTGTTTTTCTATCCACGTCTGCTCAGTGTGAATAATATTTTTTGTGTGAGAAATACAGCAGCTTGGAGAGCGTGAGGAGAAATTGCGCGTCCGTTCCCCTCAGCGCGAGACATTTAAATCCGCATTAATGACGACTTCATATTTTCATTTTGAAGGGTTTTCCTCGTCTTTTTCCATCTCTTCTAAATAAAATGGAGTCTAAAACCAATATTCGTGTGGTCTCTGTTATTATCAGTGAGAAAGAAGTGGATTCGTGAGAGAAAAGCGGACAAACGGCTGTCTCTTCAGGCGGCTTGTGTACGTCCAAGCTCTGTGTCGTCCATCCAGTGACAGGGTCGCCTCAGCGGTGTTTAATCGATATTTCTCTCATAAACGCCAACTTAATCAATGTCTCCAAAGCTATTCAGCTGGGAGTCAAGCTGTTCTTTGTAGTCTTGCTAGGCTCAATGGAAGAACCCGTTCAAATATCGGCGTTTCAGCGACTATTCCGCTCTCAATGACATGTCGCTGTCCCCATTCACTTTCCTCAGCTGATCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802487 lncRNA upstream 7218 6258809 ~ 6262932 (+) True G681537
TU802470 lncRNA upstream 62141 6207092 ~ 6208009 (+) True G681521
TU802455 lncRNA upstream 90229 6179672 ~ 6179921 (+) True G681506
TU802171 lncRNA upstream 318276 5927417 ~ 5951874 (+) True G681237
TU802407 lncRNA upstream 423268 5846662 ~ 5846882 (+) True G681459
TU802568 lncRNA downstream 13705 6397518 ~ 6403932 (+) True G681606
TU802546 lncRNA downstream 58490 6442303 ~ 6467224 (+) False G681591
TU802543 lncRNA downstream 79915 6463728 ~ 6467224 (+) False G681591
TU802544 lncRNA downstream 79915 6463728 ~ 6465357 (+) True G681591
TU802548 lncRNA downstream 88182 6471995 ~ 6474784 (+) False G681592
CI01180000_06183820_06187700.mRNA mRNA upstream 82249 6182149 ~ 6187901 (+) True CI01180000_06183820_06187700
CI01180000_06060886_06073483.mRNA mRNA upstream 195928 6059381 ~ 6074222 (+) True CI01180000_06060886_06073483
CI01180000_05928275_05933064.mRNA mRNA upstream 336898 5928275 ~ 5933252 (+) False CI01180000_05928275_05933064
CI01180000_05919195_05919836.mRNA mRNA upstream 349703 5918105 ~ 5920447 (+) True CI01180000_05919195_05919836
CI01180000_05875768_05878028.mRNA mRNA upstream 391431 5875069 ~ 5878719 (+) True CI01180000_05875768_05878028
CI01180000_06503211_06517041.mRNA mRNA downstream 119398 6503211 ~ 6517102 (+) True CI01180000_06503211_06517041
CI01180000_06532667_06556697.mRNA mRNA downstream 148463 6532276 ~ 6557504 (+) True CI01180000_06532667_06556697
CI01180000_06581704_06589445.mRNA mRNA downstream 197177 6580990 ~ 6589481 (+) True CI01180000_06581704_06589445
CI01180000_06608734_06626459.mRNA mRNA downstream 224921 6608734 ~ 6626812 (+) True CI01180000_06608734_06626459
CI01180000_06638215_06643427.mRNA mRNA downstream 253996 6637809 ~ 6643820 (+) True CI01180000_06638215_06643427
TU802202 other upstream 896388 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 1484519 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 2485709 3765691 ~ 3784441 (+) True G680736
TU801631 other upstream 2697753 3553277 ~ 3563250 (+) False G680723
TU802553 other downstream 89222 6473035 ~ 6478999 (+) True G681592
TU802663 other downstream 249095 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 272033 6655846 ~ 6659546 (+) True G681667
TU802812 other downstream 1019334 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 1279610 7663423 ~ 7694381 (+) True G681822

Expression Profile