RNA id: TU802662


Basic Information

Item Value
RNA id TU802662
length 277
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G681685
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6631653 ~ 6631929 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAAATCAGTTGTACTTTGCCAATGAAAATGTAATGCTAATGCAGAGGCAGAAAAACACCAAACAAAAAGAACATTTCAGGGAAGCAAGTCTCACTCAAATAAAGCGAGTGAATTCAAAATCGACTGAAAGTACAACTGGCAGCATTCTGAGCTTTGCAAAAAATGATTTATATTCTGTAACCAGACCCAAACCATTCATGTTAAAATTCATTCATTGCTTTGCAATTTGGCCTGGGTGAGTTTCCTCACCACTGCACCAGCAACTTTTATTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU802660 lncRNA upstream 1107 6630330 ~ 6630546 (+) True G681683
TU802659 lncRNA upstream 1590 6629825 ~ 6630063 (+) True G681682
TU802554 lncRNA upstream 152654 6471995 ~ 6478999 (+) False G681592
TU802548 lncRNA upstream 156869 6471995 ~ 6474784 (+) False G681592
TU802543 lncRNA upstream 164429 6463728 ~ 6467224 (+) False G681591
TU802648 lncRNA downstream 13179 6645108 ~ 6645323 (+) True G681674
TU802626 lncRNA downstream 13513 6645442 ~ 6646838 (+) True G681652
TU802686 lncRNA downstream 103924 6735853 ~ 6736093 (+) True G681706
TU802688 lncRNA downstream 105670 6737599 ~ 6737901 (+) True G681708
TU802719 lncRNA downstream 205390 6837319 ~ 6837698 (+) True G681739
CI01180000_06608734_06626459.mRNA mRNA upstream 4841 6608734 ~ 6626812 (+) True CI01180000_06608734_06626459
CI01180000_06581704_06589445.mRNA mRNA upstream 42172 6580990 ~ 6589481 (+) True CI01180000_06581704_06589445
CI01180000_06532667_06556697.mRNA mRNA upstream 74149 6532276 ~ 6557504 (+) True CI01180000_06532667_06556697
CI01180000_06503211_06517041.mRNA mRNA upstream 114551 6503211 ~ 6517102 (+) True CI01180000_06503211_06517041
CI01180000_06369051_06375352.mRNA mRNA upstream 254400 6368381 ~ 6377253 (+) True CI01180000_06369051_06375352
CI01180000_06638215_06643427.mRNA mRNA downstream 5880 6637809 ~ 6643820 (+) True CI01180000_06638215_06643427
CI01180000_06704767_06711402.mRNA mRNA downstream 72838 6704767 ~ 6712156 (+) True CI01180000_06704767_06711402
CI01180000_06714748_06715005.mRNA mRNA downstream 82676 6714605 ~ 6715107 (+) True CI01180000_06714748_06715005
CI01180000_06755090_06760583.mRNA mRNA downstream 123161 6755090 ~ 6760583 (+) True CI01180000_06755090_06760583
CI01180000_06762114_06762590.mRNA mRNA downstream 130185 6762114 ~ 6762772 (+) True CI01180000_06762114_06762590
TU802553 other upstream 152654 6473035 ~ 6478999 (+) True G681592
TU802202 other upstream 1257891 5370410 ~ 5373762 (+) True G681268
TU802064 other upstream 1846022 4783305 ~ 4785631 (+) True G681137
TU801653 other upstream 2847212 3765691 ~ 3784441 (+) True G680736
TU801630 other upstream 3059256 3553562 ~ 3563250 (+) True G680723
TU802663 other downstream 979 6632908 ~ 6634989 (+) True G681686
TU802641 other downstream 23917 6655846 ~ 6659546 (+) True G681667
TU802812 other downstream 771218 7403147 ~ 7469605 (+) True G681817
TU802830 other downstream 1031494 7663423 ~ 7694381 (+) True G681822
TU802826 other downstream 1062394 7694323 ~ 7694381 (+) True G681822

Expression Profile