RNA id: TCONS_00021602


Basic Information

Item Value
RNA id TCONS_00021602
length 3331
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_011076
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 50926455 ~ 50952266 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTAAAACAAAAAGCGTGTAGTGAAACCAAACGCGGATATATATGACAGGAAAATGAAAACCAGGAGAAAACCGCATAgccCTCCAGACTGACATGAACGCACTTCTTCATCCTTTTGTAGTTTTGTCTTTGACAAGTTTTCCATTGGCAGTTGTATGTCTGAGCCCTGTTCCTGTTCAGTGTTCGACGTCTCCATTGCTGGTGGCTTCCAGAGCGACTGCAGTGTTTGAGGTGCAGACTGTGCCAAATGTGCCCCTCATCAGATGGACGGACAGCGCAGCCACTACACTGGCCATGTGGGTGAACGGTGGGCCCGTCCTGATGCCGGTTCAGCAGTTCCAGGGCAGGATCACAATATCTGCCACCCAGTTCACCATCAGCAGCTGCCAGATCAGCGACTCTGGAAACTACAGCGTCTCTGTCGAACCCTCGTCTACCTCTGGACTCAGTGTGAACACGTGTTCAGTGCAGCTCAAGGTGTTCGGAGGGAATGTGTCTGTGAGCTGCAGCTGGACTGCGGGCTCTCAGGTCAGTGTGGTTTGGGGGAAAGCAGGAGCTCCTCTATCCTCTGATTCCCACATCAGCATCAGCTCTGGATCTCTGCTCATCAACTCGGCCAGCAGACAAGACTCTGGACAATATTCCTGTACTGTCAGCAACCCCGTCAGCGCTCAGACAGCCAAAGGAAACCTCAACATCTACTATGGTCCAGATTCTCCCCAGCTGACAAAGAGCTCTAATCAGTGTGTTGGAGGTGGAGACGCTACAGTGGGTCAGTCGGTGCTTCTCAGCTGTACATCTGCCTCTCTGCCTCCTGCATCCTTCACATGGCAAATCAACGGCCAGACGGTCAGCTCCAGCCAATCAGCGAGTGGCTCGCTGACCCTGCAgatcttctccaccaatcagagcgGCAGCTACGTCTGCACCGCACACAATGGCATCACGGGAGGGGCATCAAGTCAGCAGATTAACCTGGCCATTGTGGGTACGTGTCTCAGCGCTGGGGCTGTCGCGGGGATCGTCGTTGGCTGTTTTGTTGCGCTCCTCATTATTATCATTGTCATCATTGTGCTCCTGCGACAGAGAAATGTTGATCggagattaaaaaataatattgaacttCAGAAGACAAACCCGAATGAAGGAATGACAATAGCAAACAGAGCTCTTGTAAATGAAAACCACCCTGATCCAACATTACACAGCTCGCTCCCACAAAACGTCACTAATCACAACAATGGGAACATCAGCACAATGGCACAAAACGTAGCCAGAAACTCACTCCATCATAATGGCCATCTGAACACTGATGAATTCCAGCACAACTTCAGTGCAGTGCCAGACAATGGGCATCAAATCAGCAACAATTCAACAAATCCCAACAATGACCCTCCGAGGTCGTTCCCACAACACACTCCTAATATTGTCATACAAACGGGCAATTCCCAGCCTGTTCATGTAAGCCTCAATGCATTGCCACACACTGATCAGTTCAACACACAACCTCAAACAGTGCATGTCAACTTGAACACATACCCTCCAGATGCACAGCAGACAGCCTGGCAGCATGCAGACCAAAGAGAACTACATAGTCAACACATGAATGCAAATCCTCCACACACTGGATTACAGAACTCTAACCAACATAATAACCTCATGCAAACCAATGCAATACACCAACCTACAAACTCCAGCCATCGAAATCACTCTCAAAGTGCCTTGCAGAACTCAAGATCAGGCAATCAAACACTAAACAATGCTTCAGCAAATGGATCCCAACAAACCAACAGCCTGATTCAGACTGGCTACTCGCACCATTCCAACCAAACCAATGCAAACCGCAGAAATGCCAACATGCAGTCAACAAGAGAAGAGCAAACCGGTCGTTCAAACCGATATCGCACAAACAATCAGTTCGAGAACACGAACACAAACCTCCAGCAGATCCCTTGGGACCGATTGCGGGGAACGCCGGCGTATCCCAACCAAGAAGTGGAAAGCTCTGATAATAGTGAATCTTCAGACTGGATGCCGAGACCTCCTCAGCAGGCTAATCGAAGGGGTCGTTCTACTCAGAGACAACACGAAACCGAACTTTCCAGCAGGTCAACACAAGCTGCTTCTTCCCCCCAAAGAAGAGACATGCATAGACCAGCTATGCACAGCCAATTGCAAAACGACCCAGATTTGTGGAGTCAAGTGGTGGAGCAGATGCAAGTCCAATCGCCAAGACATGCATTACCTCAAACTGAATCCTCTTGGGGTCAAAATCCAATCCCTATTGGTCAACCTTTGGGAACAACAATACCTCAAACACATCCTCAGAGACACCACGAAGCTGAACTTTCTAACAGGTCAACCCAAGTTGCTGCCTCCCCCGAAAGAAGAGACCTCCAAAGACCAATTATTCACAACCAATCCCAAATGGATCCAAATTTGTTTAGTCAAGTCCAATCGCAAATCCCAAGACATGCATTACCTCAAACTGAAATCTCTCGAGTTCAGAATCCAATCCCCATTGGTCAACCTCGGGGAACGGCAATACCTCAAACACATCCTCAGGCACAAACTACCACCAGAACTCAAGAAGTTTCAGCTCAGCCAGTTGTTTCTCTTACCGAGGCGGCACTTCGCCAACACACTGCCCAGACTATTAACACATTCGCCAATCGAAACCAGCAAACTCAAGCAGCCCTGCAGAACCCTGGACCTCCTCAACCCGTCCCGCAGGTTAATAAAGCGGGAAAGAGGGCTCCTACTCCACCTCGGGTTCTGCGGCCAGCAGAGTTTCAAACACTTCCACGTGAGCGTACACAAAAAGTCCAGCCTGTGAGAGTCCAGCATCAACACAGAtctccaaacacacacagacaaacccATATTAGGCATATCAGCCCTCAACGGATGCCAGGGATGCATCACATGCATGGACACCCAATGCATATGCAACAGGTCCACAGAGGCAGACCCAGACGTTGAGGAAATGCAACGCTCGTCCATCTCCACGCTATTTGCACTGCAAAAAACTTTCCTAGCAAGCACAATGTCTCTCTGGTGGAAAGAAACAAATGCTCAGCCGTTCCTCAGACTCATTGTGCCATACGAATCTCTGCATTTtatcagagagagagagcggtacTGATTAAAAAGACTGATCTTTTACTTTGTTTATCCGTCACGTACGCATGCGAGAGCAGTGTGAATTTCATCCCTCAGAACAATGCAGCTCTGGGCTTTTTTCTAGCACTCAAACctctgaaaataaaacacaatgcagTGTTTTTCCACAGACAGGAAGACTTGAACGAAATCCAAATGAATTAGGAC

Function

GO:

id name namespace
GO:0070593 dendrite self-avoidance biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098632 cell-cell adhesion mediator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-642 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane.

Ensembl:

ensembl_id ENSDART00000165408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022271 lncRNA downstream 1689354 49236408 ~ 49237101 (-) True XLOC_011064
TCONS_00022270 lncRNA downstream 1704362 49215478 ~ 49222093 (-) True XLOC_011063
TCONS_00022269 lncRNA downstream 1741971 49155860 ~ 49184484 (-) True XLOC_011062
TCONS_00022268 lncRNA downstream 2105110 48820350 ~ 48821345 (-) True XLOC_011061
TCONS_00021584 lncRNA downstream 2509692 48415974 ~ 48416763 (-) True XLOC_011058
TCONS_00022272 lncRNA upstream 126401 51078667 ~ 51080430 (-) False XLOC_011080
TCONS_00022273 lncRNA upstream 126649 51078915 ~ 51080430 (-) True XLOC_011080
TCONS_00021841 lncRNA upstream 923105 51875371 ~ 51884294 (-) False XLOC_011088
TCONS_00021842 lncRNA upstream 945490 51897756 ~ 51947869 (-) False XLOC_011089
TCONS_00021843 lncRNA upstream 1574586 52526852 ~ 52540111 (-) False XLOC_011091
TCONS_00021601 mRNA downstream 7547 50917913 ~ 50918908 (-) True XLOC_011075
TCONS_00021600 mRNA downstream 28568 50889118 ~ 50897887 (-) True XLOC_011074
TCONS_00021597 mRNA downstream 697181 50214819 ~ 50229274 (-) False XLOC_011072
TCONS_00021598 mRNA downstream 697262 50215587 ~ 50229193 (-) True XLOC_011072
TCONS_00021596 mRNA downstream 723397 50183190 ~ 50203058 (-) True XLOC_011071
TCONS_00021605 mRNA upstream 49691 51001957 ~ 51072406 (-) True XLOC_011079
TCONS_00021606 mRNA upstream 132206 51084472 ~ 51151993 (-) True XLOC_011081
TCONS_00021607 mRNA upstream 292031 51244297 ~ 51254694 (-) False XLOC_011082
TCONS_00021608 mRNA upstream 292426 51244692 ~ 51253925 (-) True XLOC_011082
TCONS_00021609 mRNA upstream 314236 51266502 ~ 51271962 (-) False XLOC_011083
TCONS_00021599 other downstream 287669 50638670 ~ 50638786 (-) True XLOC_011073
TCONS_00021592 other downstream 930861 49995478 ~ 49995594 (-) True XLOC_011068
TCONS_00021580 other downstream 2983198 47943143 ~ 47943257 (-) True XLOC_011054
TCONS_00021533 other downstream 4585798 46340543 ~ 46340657 (-) True XLOC_011031
TCONS_00021532 other downstream 4709546 46216808 ~ 46216909 (-) True XLOC_011030
TCONS_00021604 other upstream 8980 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021614 other upstream 803126 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021617 other upstream 989564 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021634 other upstream 2690554 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021635 other upstream 2698636 53650902 ~ 53655539 (-) True XLOC_011103

Expression Profile

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