RNA id: TCONS_00003397


Basic Information

Item Value
RNA id TCONS_00003397
length 576
lncRNA type antisense_over
GC content 0.51
exon number 6
gene id XLOC_001162
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19335193 ~ 19349895 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAAAGATGGCATCAGTGAACGTGTGGAGCAGGACGAAGATGGGGTCGTTTGGTGACAGTGTTCCTGAAGCTCTGAGAGGACGTGGAGTAATACGGTGGTGTGTCGAAGGTGTTGAGCTCTAGACAGTCGATGACATCCTGTGGTTCTGGTAATCTTTGAACCATTGGACGGGCCACGTTACCAGCAGGGTTTCTCCTGATTGGACTGGATTCTGTGTCTAAAAACATACAACAGACAAgATGACTCTCCACTGAGAGAACACAGAGTTGGAGCTGATGCCGTTGGTGTCGAAGCTGCTTCTGGCTCCTATCAGTTGCAGAAGGTGGTACCGATGCCAAGTGACAAATCCTGGGCCTTCATGAGAGAAATCAACACCCCCGAAGCTCTGCTGGCCTGGACCCATGGCTCAAAATCTCCTGAAAGCGGCGGGTGCAAATGACCAGGTCAGGATGAACAGTTCTTTTAGCCTGGTCCAGAGCATTCACAAAGGCTCTTTTCTCATCGGCAGACATCTGCATGATGTTACGGCGcactgacaacacaaacacacacagTTCGGCCCGGTCAGACCATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002946 lncRNA downstream 61001 19252358 ~ 19274288 (-) True XLOC_001161
TCONS_00003395 lncRNA downstream 222349 19110119 ~ 19112940 (-) True XLOC_001159
TCONS_00002945 lncRNA downstream 244060 19090419 ~ 19091229 (-) True XLOC_001158
TCONS_00002944 lncRNA downstream 388431 18945367 ~ 18946858 (-) True XLOC_001156
TCONS_00002943 lncRNA downstream 389974 18944463 ~ 18945315 (-) False XLOC_001156
TCONS_00001855 lncRNA upstream 155582 19496924 ~ 19502378 (-) True XLOC_001165
TCONS_00003399 lncRNA upstream 162518 19503860 ~ 19505040 (-) True XLOC_001166
TCONS_00003400 lncRNA upstream 189410 19530752 ~ 19538183 (-) True XLOC_001167
TCONS_00001857 lncRNA upstream 228847 19570189 ~ 19573123 (-) False XLOC_001168
TCONS_00001858 lncRNA upstream 234211 19575553 ~ 19576814 (-) True XLOC_001168
TCONS_00001844 mRNA downstream 97677 19122920 ~ 19237612 (-) False XLOC_001160
TCONS_00001848 mRNA downstream 97713 19205560 ~ 19237576 (-) True XLOC_001160
TCONS_00001847 mRNA downstream 101399 19205197 ~ 19233890 (-) False XLOC_001160
TCONS_00001846 mRNA downstream 119953 19123610 ~ 19215336 (-) False XLOC_001160
TCONS_00001845 mRNA downstream 119953 19123610 ~ 19215336 (-) False XLOC_001160
TCONS_00001849 mRNA upstream 11706 19353048 ~ 19402802 (-) False XLOC_001163
TCONS_00001852 mRNA upstream 77038 19418380 ~ 19431510 (-) True XLOC_001164
TCONS_00001853 mRNA upstream 131686 19473028 ~ 19502322 (-) False XLOC_001165
TCONS_00001854 mRNA upstream 131686 19473028 ~ 19502351 (-) False XLOC_001165
TCONS_00001856 mRNA upstream 221410 19562752 ~ 19599242 (-) False XLOC_001168
TCONS_00001836 other downstream 523805 18810891 ~ 18811484 (-) False XLOC_001153
TCONS_00001833 other downstream 582825 18716178 ~ 18752464 (-) False XLOC_001151
TCONS_00001834 other downstream 593671 18726359 ~ 18741618 (-) True XLOC_001151
TCONS_00001826 other downstream 720315 18605635 ~ 18614974 (-) True XLOC_001150
TCONS_00001824 other downstream 748091 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001850 other upstream 19863 19361205 ~ 19366174 (-) False XLOC_001163
TCONS_00001851 other upstream 27655 19368997 ~ 19402815 (-) True XLOC_001163
TCONS_00001874 other upstream 501892 19843234 ~ 19845380 (-) True XLOC_001174
TCONS_00001878 other upstream 1139767 20481109 ~ 20553129 (-) False XLOC_001178
TCONS_00001883 other upstream 1498140 20839482 ~ 20878076 (-) False XLOC_001182

Expression Profile

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