RNA id: TCONS_00001848


Basic Information

Item Value
RNA id TCONS_00001848
length 957
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_001160
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19122920 ~ 19237612 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAAAAAGCGAGACCTGCGAGCTCTTTACGAGCGCTGGAAACACGCAGTGCTTTTGCCGCTGTTGTGCTTTTTATAGTTCAGCCCAGCACCGGTGAACATCAGAAGGGAGAGGACTGGCTTCTGGATTATTTTTGTGCTGCTTATAGATGAATTTACAGGCGGGACCGAGCCGGTGAGACCCGAATGAAAACCTGAACCCGACAGCGATGTTGATCAGGTTATGAGTGCACTTACAGCTTGGTGATCCACAAACACAGACAAGCCAATGAGAGGATGGCCAGAGGTCACATGATCTACAGAAGCGCCTACCAGCCGGTACTACTGATTCTACTGAGCGCGCTCCAGCTGGCGCATATGCAATCTGCTCCTCGCTTCACTCGAACTCCCACTGATCAGATAGGAGTTCAGGGCGGCGTCGCCTCCTTCGTCTGTCAGGCCACTGGAGACCCACAACCCAAAATCACATGGAGCAGAAAAGGCAAAAAAGTCACCAACCAGAGATTTGAGgtGATAGAGTTTGAGGATGGCTCAGGGTCTGCGTTGCGAGTGCAGCCGCTTCGAACCCCCCGTGACGAGGCTATTTATGAATGTGTTGCTTCTAATGAAATTGGGGAGATCACCGCCTCTACGCGTCTTAGCGTTCTCCGCGagGACCAGCTCCCTGCGGGCTTTCCATCTATAGACATGGGCCCTCAGCTGAAGGTGGTGGAGCGGTCTCGCACCGCTACCATGCTGTGTGCAGCCAGCGGGACGCCTGACCCCGAAATCACCTGGTTTAAAGATTTCCTGCccattgacacacacactcacggccGCATCAAACAGCTGCGCTCAGGTGTGTGCGCTGAAGGAGTCACGCTCTCTCGGCTCTTATTCTCCTCATTTGTTTAAAGGTGCACTTAAGAAATGTCCAGCACACATTTAATGGacataatttacatatatttctaaaAGG

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-38 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in Rohon-Beard neurons; lateral line ganglion; olfactory placode; and trigeminal ganglion. Orthologous to human PTPRD (protein tyrosine phosphatase receptor type D).

Ensembl:

ensembl_id ENSDART00000143663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003395 lncRNA downstream 92620 19110119 ~ 19112940 (-) True XLOC_001159
TCONS_00002945 lncRNA downstream 114331 19090419 ~ 19091229 (-) True XLOC_001158
TCONS_00002944 lncRNA downstream 258702 18945367 ~ 18946858 (-) True XLOC_001156
TCONS_00003394 lncRNA downstream 258709 18943122 ~ 18946851 (-) False XLOC_001156
TCONS_00002946 lncRNA upstream 14782 19252358 ~ 19274288 (-) True XLOC_001161
TCONS_00003396 lncRNA upstream 97617 19335193 ~ 19349895 (-) False XLOC_001162
TCONS_00003397 lncRNA upstream 97713 19335289 ~ 19341342 (-) False XLOC_001162
TCONS_00003398 lncRNA upstream 99273 19336849 ~ 19349885 (-) True XLOC_001162
TCONS_00001855 lncRNA upstream 259348 19496924 ~ 19502378 (-) True XLOC_001165
TCONS_00001843 mRNA downstream 125603 19074326 ~ 19079957 (-) True XLOC_001157
TCONS_00001841 mRNA downstream 356531 18841462 ~ 18849029 (-) False XLOC_001154
TCONS_00001842 mRNA downstream 356605 18841636 ~ 18848955 (-) True XLOC_001154
TCONS_00001838 mRNA downstream 394043 18810891 ~ 18811517 (-) False XLOC_001153
TCONS_00001835 mRNA downstream 401641 18779168 ~ 18803919 (-) True XLOC_001152
TCONS_00001849 mRNA upstream 115472 19353048 ~ 19402802 (-) False XLOC_001163
TCONS_00001852 mRNA upstream 180804 19418380 ~ 19431510 (-) True XLOC_001164
TCONS_00001853 mRNA upstream 235452 19473028 ~ 19502322 (-) False XLOC_001165
TCONS_00001854 mRNA upstream 235452 19473028 ~ 19502351 (-) False XLOC_001165
TCONS_00001856 mRNA upstream 325176 19562752 ~ 19599242 (-) False XLOC_001168
TCONS_00001836 other downstream 394076 18810891 ~ 18811484 (-) False XLOC_001153
TCONS_00001833 other downstream 453096 18716178 ~ 18752464 (-) False XLOC_001151
TCONS_00001834 other downstream 463942 18726359 ~ 18741618 (-) True XLOC_001151
TCONS_00001826 other downstream 590586 18605635 ~ 18614974 (-) True XLOC_001150
TCONS_00001824 other downstream 618362 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001850 other upstream 123629 19361205 ~ 19366174 (-) False XLOC_001163
TCONS_00001851 other upstream 131421 19368997 ~ 19402815 (-) True XLOC_001163
TCONS_00001874 other upstream 605658 19843234 ~ 19845380 (-) True XLOC_001174
TCONS_00001878 other upstream 1243533 20481109 ~ 20553129 (-) False XLOC_001178
TCONS_00001883 other upstream 1601906 20839482 ~ 20878076 (-) False XLOC_001182

Expression Profile

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