RNA id: TCONS_00001835


Basic Information

Item Value
RNA id TCONS_00001835
length 3437
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_001152
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 18779168 ~ 18803919 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAACAGCAAAAGTGAAAGACAAAGCTTATGATAAATTAAAAAAGAGTGGCCAGAGGCACCCTTCATAAGCTTATCTCGTATTCGTTTATCGTTTGAATTACAGTTTACATTTGAAGTACATCAACATGGAGAATGGCCAGGGGAGCACAGGGGACAGTCGTCTGGATCAAGCTGTCACGCAGTGGCTTCAGTATGACAAGAATCCAAAGACGGCTGCTGCTGTGCGGTCAATGGTTAAGGATGGAGCCTTGTCAGAGCTGCAGAAGTGTTTCGGGGCTCGTATGGAGTTTGGAACCGCAGGACTGAGAGCTGCCATGGGACCAGGAGTGTCCTGCATGAATGACCTCACTATCATACAAACCACGCAGGGTTTTTGCGCATACCTGGAGGAGTGTTTTGTGGATCTGAAGCAGAGGGGTGTAGTTATCGGGTTTGATGCTCGTGCTCACCCTCCCAGCGGCGGCAGTAGTAAAAGATTCGCCTGTCTTGCTGCTTGTGTTCTGATGAGCCGAGGCGTCCCAGTTCACCTCTTCAGTGACATCACACCTACTCCATATGTGCCTTTTGCTGTGTCGCATCTTGGACTGTGTGCTGGTATCATGGTAACAGCCTCCCATAATCCCAAACAAGATAACGGATACAAGGTGTACTGGGCAAACGGAGCTCAGATCATTCCTCCTCATGATAAGGGCATCGCTGCAGCTATAGAACAAAACCTTGAGCCCTGGCCTGAATCCTGGGACACAGATGAGGGTCTTCGGAGTTCACTGCTTAATGACCCATATCAGGACATACACAGAGAATACTGTCAAACCATCCAGCAGCACTGCTTTCACAGGGAGCTGAATAGGAATACAGCAGTGAAGATTGTACACACATCAGTTCATGGAGTGGGACATATTTTTGTCCAGGCTGCTTTTAAGGCCTTCGATCTTCAGCCTCCATATGCCGTGGAAGAACAGAAAGATCCTGATCCGGAGTTCCCTACCGTCAAATACCCAAACCCTGAGGAGGGAGAGGGAGTCCTGaCGCTGTCCTTCGCGCTTGCAGATAAAGAAGGAGCAAGTGTTATTCTGGCGAATGACCCTGACGCTGACAGACTAGCTATTGCAGAGAAACAGGAGAGTGGGAAGTGGAGAGTTTTCTCTGGGAATGAATTAGGTGCTTTACTCGGCTGGTGGATTTTCCAATGCTGGAAGCAGCAGAAAGTGGAAGGAAAAGGCTCCATTAAGGACGTCTACATGCTATCCAGCACAGTCTCCTCAAAAATCCTCAGAGCCATTGCAGTGAAAGAAGGCTTTCACTTTGAGGAGACTCTTACAGGCTTTAAATGGATGGGAAACCGAGCCAGAGAGTTGATGGACCAAGGAAAGACTGTTCTGTTTGCCTTTGAAGAAGCTATTGGTTACATGTGTTCTCCTGCAGTTTTGGACAAAGATGGTGTGAGTGCAGCTGCTATTGCTGGTGAATTCATCTCTTACCTGGCATCTAAAAACATAACTCTGTCCCATCAACTGAGATCCATTTATGAAGAGTACGGTTACCACATTACCAAGAACTCCTACTTCATCTGTCACAACCAAGACACCATTAAAAAGTTGTTTGAGCGCCTCCGAAACTACGGAGTGGACAACTCGTACCCTAAAGAGTGTGGAGGTTTTGCCATCAGTGCAGTGAGAGACCTTACAACTGGATACGACAGCAACCAGCCCAACAACAAGGCCGTTCTGCCCACTAGTAAGAGCAGTCAGATGATTACCTTCAGTTTTGCTAATGGTGGTGTGGCTACAATGAGGACCAGTGGAACGGAGCCTAAGATCAAATACTACACTGAACTCTGCGCTGCACCAGGAAACAGTGATCTCAACCAGTTGACAAAGGAGTTGGATAACCTGGTTGATGCCATCGTGGAGCACTTCTACCAACCTGAGAAAAACGGCCTGACTCCCCGACCAGAGTGAGAGATACCACAATACGCCACTACCGGGATGTTCTTAACTAATTCTGCTCTTAGTCTTAAACAACCACACATAACCAGTTTTATCACATGGGTCTTAATCTATGCAGGTTTCCTATGCACTTTTATCTGCTTTTAATGCAGGAAACGTAGATCAAATCTGGTGCCACATGAACATAACCGTTGCCTTTTTCATTTACTGGTTCATTTCACCACTTCTCAGTTTTATAATCTatgatattatgttatatatatatatatatatatatacaagcaattatttttatttgcctttttagACGTTTAGTAGTGAACTATGAATGTACTAATTAACAGAGTTTGAATTAATTTAAAGGTTATTTACCTTAGCAGATATTTTAGGTGATTGACACAAATGTTTTCATATTGCAGGAGTACAAGACAGTGTCTAGTTACTGTTCGATTTAGACCAAATAACCTCACAAATCAGAATGCCAGCTATAGATTAGCTATGTTCAAGTCTAGAATTAaaccaaaaatcatttaaaaggaATGAGAGAGACCTTTACCTGGGACAAAAAGACTGATACCGATTTTAAGCTTGCCAAGTTTATATGATTCCATTGCTTCCTCATTCCACCATCTGTATTTAGTGACCTTTAGTTGTGTAATTTATGAAATGTGAGGTGTTTGTAAATGTTTGTCAACATTTTGAGATTGGGAACaagtttgtaatgttttattctCTCCTCCCCATTCCAGCACATGAGTTGTTTTCTTGAAAGCATAAGTGCTTGACCAAGTAGATTTCTGGCAATTAAGTAACTTGTTTTGAAACATCAAATAGCCATTGCATTGAGATTAATGCTGTATTACCAgcacaatgggctatatgcacacagacttttaattttcaaccaggcagcccaagggcttccggtgaactgtctttccataacgtttaagatctgatttctttaaaaatcagcgatattcactgcctgttagatatacgatatgaagtgagTCTCAGATCGGACAAGTAGCACTGCATTAATATATATTTCCCcaccatgtttttaaaatataacaagtattttcaatggaatttctgcgctagcctgttgcCACAGACAGCCCTAGCTGTCTTTTATCTCGTTTTAGGCTTCAACAACTAAATGAAAgctaagtttatttaactgaatgtaatgtaattacattacaacatcgatgctgtaaaaacaatcttgtgaaattgaaaatagtcacattaagctttcaccggaagtttatcattggctttaaaactctagctgtgcatagagcctatTGTTCACTAGTTATGAATTcatgttattttatgtaaagCTGACCAGTCAGTCCACCATCTTTTTCATGTAAACAGATTTAATATGTTTCGGGTGCTATTTAGTTTAACATTTTAATCACAAAGTTGTTTAACCCcctgttttaaatgaataaactgCAAGTGGTCACCA

Function

GO:

id name namespace
GO:0071704 organic substance metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00052 Galactose metabolism
ko00500 Starch and sucrose metabolism
ko00520 Amino sugar and nucleotide sugar metabolism
ko00230 Purine metabolism

ZFIN:

id description
ZDB-GENE-040426-2218 Predicted to enable intramolecular transferase activity, phosphotransferases and magnesium ion binding activity. Predicted to act upstream of or within glucose metabolic process. Orthologous to human PGM2 (phosphoglucomutase 2).

Ensembl:

ensembl_id ENSDART00000020970

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003392 lncRNA downstream 541228 18233995 ~ 18237940 (-) False XLOC_001144
TCONS_00003391 lncRNA downstream 541228 18233995 ~ 18237940 (-) False XLOC_001144
TCONS_00003390 lncRNA downstream 541398 18230296 ~ 18237770 (-) False XLOC_001144
TCONS_00003389 lncRNA downstream 541410 18230296 ~ 18237758 (-) False XLOC_001144
TCONS_00003388 lncRNA downstream 541449 18217454 ~ 18237719 (-) False XLOC_001144
TCONS_00001840 lncRNA upstream 6972 18810891 ~ 18811483 (-) False XLOC_001153
TCONS_00001837 lncRNA upstream 6972 18810891 ~ 18811487 (-) False XLOC_001153
TCONS_00001839 lncRNA upstream 6975 18810894 ~ 18811484 (-) True XLOC_001153
TCONS_00003393 lncRNA upstream 130003 18933922 ~ 18936968 (-) True XLOC_001155
TCONS_00002942 lncRNA upstream 138480 18942399 ~ 18945609 (-) False XLOC_001156
TCONS_00001827 mRNA downstream 6857 18642117 ~ 18772311 (-) False XLOC_001151
TCONS_00001832 mRNA downstream 6927 18645348 ~ 18772241 (-) False XLOC_001151
TCONS_00001831 mRNA downstream 6927 18645348 ~ 18772241 (-) False XLOC_001151
TCONS_00001830 mRNA downstream 6927 18645348 ~ 18772241 (-) False XLOC_001151
TCONS_00001829 mRNA downstream 26187 18644204 ~ 18752981 (-) False XLOC_001151
TCONS_00001838 mRNA upstream 6972 18810891 ~ 18811517 (-) False XLOC_001153
TCONS_00001841 mRNA upstream 37543 18841462 ~ 18849029 (-) False XLOC_001154
TCONS_00001842 mRNA upstream 37717 18841636 ~ 18848955 (-) True XLOC_001154
TCONS_00001843 mRNA upstream 270407 19074326 ~ 19079957 (-) True XLOC_001157
TCONS_00001844 mRNA upstream 319001 19122920 ~ 19237612 (-) False XLOC_001160
TCONS_00001833 other downstream 26704 18716178 ~ 18752464 (-) False XLOC_001151
TCONS_00001834 other downstream 37550 18726359 ~ 18741618 (-) True XLOC_001151
TCONS_00001826 other downstream 164194 18605635 ~ 18614974 (-) True XLOC_001150
TCONS_00001824 other downstream 191970 18584948 ~ 18587198 (-) True XLOC_001149
TCONS_00001820 other downstream 442330 18252614 ~ 18336838 (-) True XLOC_001147
TCONS_00001836 other upstream 6972 18810891 ~ 18811484 (-) False XLOC_001153
TCONS_00001850 other upstream 557286 19361205 ~ 19366174 (-) False XLOC_001163
TCONS_00001851 other upstream 565078 19368997 ~ 19402815 (-) True XLOC_001163
TCONS_00001874 other upstream 1039315 19843234 ~ 19845380 (-) True XLOC_001174
TCONS_00001878 other upstream 1677190 20481109 ~ 20553129 (-) False XLOC_001178

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_06557191_06577750.mRNA True 2967 mRNA 0.47 16 CI01000300 6557011 ~ 6578140 (-)