RNA id: TCONS_00024964


Basic Information

Item Value
RNA id TCONS_00024964
length 1009
lncRNA type sense_over
GC content 0.48
exon number 5
gene id XLOC_012293
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40211155 ~ 40512790 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCTGCACATCCACGGAGTGCCCCTGATCACCGTCTACGTACGCTTGGTACCTTTCCGTTTCAACTGCTCTGCGCTCCTCGCAACATATTGTTTTGAAAACTAGGATCGCCGTTTTCCTCGGGGTGTATCTGGATATCCCTTTAGTTTGCCAACGGAATAGTCAACGCGTTTATGGATTCACGACAAAACAATGGAGAAACAGGCATCAACTGAAACAAGGGAATAAACGGGGGACGCTCGGAGAGAGGAATAACCAGTTTAACAAGAAATCTGGGGTAACTGCCCGATCTGGAGGTGCGTGTGGTcgttttcagctcattttggtGGAAACTACACAGGGATGGTGTTCTAGGACTCGGAATTTCAGTGTGCAAAAGAATGCACCCGGCTTTGGTTTGCCACTTTTCTTTTAAATCAAATAAGATGCGCTGAAAGAGCGGATGTTTTAAGCGCCTCCGTTTAGGAATCAAGTGGAATCAGAGCGAATGGATACCTTTTCGACGATTAAGGTGAACGAGTGACCCAATGAGGTGGAATACTACTTTAGCGGAGTGCTGGAAGAGAAGTCACCTTGCCCCAGTTCTCCGAGAGCGCAGGGAGAGAGACAGACATCTTTGATTGTTTGTTGCCAGTAGGGAGACGGGAAGACTAGAACCCGGTCATCGTTGTCGTCGTCATCAACTTCTCTCTGCTTCTCAAGCCCGCGGACGTAAacaacgagctaactggacaaactggttgtagtggaaaagccctccacacagagGAAACTATCTCTCTGGAAGCGTTTGGGTGGGAAAAGGCTGAGAGAAACAGCCATATGGCACAAGACACAATATAGcagTGCACACAATGCCAAATTCCCCAGGAGAAGCAGCATTGATCTACTGAAAGCTGCGTAAGTTTTCTATCCCAGGGAATCAGTGTGACAAAAAGCATCAGTGTGAGACTAATGCACCAGAAATGCCACCGTTGCCGCCCAGTGTTTTTGTGGGAACCTTTGTTTG

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024198 lncRNA downstream 266754 40021476 ~ 40022249 (-) True XLOC_012291
TCONS_00024961 lncRNA downstream 266779 40009376 ~ 40022224 (-) False XLOC_012291
TCONS_00024962 lncRNA downstream 266789 40021476 ~ 40022214 (-) False XLOC_012291
TCONS_00024960 lncRNA downstream 422964 39864881 ~ 39866039 (-) True XLOC_012289
TCONS_00024959 lncRNA downstream 741516 39500572 ~ 39547487 (-) True XLOC_012282
TCONS_00024546 lncRNA upstream 204541 40716916 ~ 40718108 (-) True XLOC_012294
TCONS_00024966 lncRNA upstream 206540 40718915 ~ 40719383 (-) True XLOC_012295
TCONS_00024967 lncRNA upstream 216856 40729231 ~ 40739732 (-) False XLOC_012296
TCONS_00024968 lncRNA upstream 216856 40729231 ~ 40739941 (-) True XLOC_012296
TCONS_00024969 lncRNA upstream 386600 40898975 ~ 40903400 (-) True XLOC_012298
TCONS_00024199 mRNA downstream 178221 40109059 ~ 40110782 (-) True XLOC_012292
TCONS_00024197 mRNA downstream 402375 39877011 ~ 39886628 (-) True XLOC_012290
TCONS_00024196 mRNA downstream 408278 39873584 ~ 39880725 (-) False XLOC_012290
TCONS_00024195 mRNA downstream 502781 39783268 ~ 39786222 (-) True XLOC_012288
TCONS_00024194 mRNA downstream 509097 39776296 ~ 39779906 (-) True XLOC_012287
TCONS_00024201 mRNA upstream 347641 40860016 ~ 40879108 (-) False XLOC_012297
TCONS_00024202 mRNA upstream 347687 40860062 ~ 40876680 (-) True XLOC_012297
TCONS_00024203 mRNA upstream 399696 40912071 ~ 40956035 (-) True XLOC_012299
TCONS_00024204 mRNA upstream 487460 40999835 ~ 41081806 (-) True XLOC_012300
TCONS_00024208 mRNA upstream 963231 41475606 ~ 41798856 (-) False XLOC_012303
TCONS_00024191 other downstream 647205 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 757074 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 1139320 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 1301588 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024174 other downstream 2898886 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024224 other upstream 2312916 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024257 other upstream 3338387 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 3546436 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 3971115 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 4627954 45140329 ~ 45151793 (-) False XLOC_012349

Expression Profile

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