RNA id: TCONS_00024204


Basic Information

Item Value
RNA id TCONS_00024204
length 1250
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_012300
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40999835 ~ 41081806 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTCTGATGTGTTTCTGTGCAGACTGACAGATATTAGACGTGGGTGCCGAGTACTGCACTGGCAGTTTAGATATATCGCTTTATTCAGTGGACAAATAGGTCATGGCTGAAGACTTTAGTGTTGTCGTTGTGGGCTCTTGTATGACTGATTTAGTAAGTCAGGCACCTCGATTCCCCAAGGCTGGAGAGACGATACATGGACACAGGTTCTTTATTGGCTTTGGTGGAAAAGGGGCCAATCAATGTGTCCAAGCTGCACGAATGGGGGCCAAAACTGCCATGGTGTGCAAGGTTGGCAGAGACGTTTTTGGGAATGACTACATTCAAAACTTCAAAAATAATGGCATATCGACTGCCTATGTAGAGCAGACTGAAAAGGCCGCGACTGGAGCCGCCTCTATCATTGTAAATGACACAGGGGAAAATGCCATAGTGATTGTTGCTGGTGCTAATTTGCTCCTGGGGCAAGAGGAGCTACAACGGGCACAGTCTGCAATAATAAACGCCAAGGTGCTCGTTTGCCAGCTTGAAATCAGCCCTGATGCATCGCTACAGGCCCTAAAAATGGCTAGAGAGAACCATGTGAAGACTATTTTTAATCCAGCTCCTGCTATTGCGTACCTGGATTCTGATTTCTACAAAGCATCTGATGTTTTCTGCTGCAACGAGTCTGAGGCCGAGATGTTGACAGGTCTCTCCGTTACTTCAGTGAAAGACGCTAGTCAAGTTGGCCTGGAGCTGTTAAACAAAGGTTGTGCTTCAGTGATTGTCACCTTGGGGTCACAGGGCTGTGTGGTGTGTCAGTCTACAAACAAGACCCCTAAACACATTCCCACCATTGAGGTCACTGCTGCGGATACTACGGGTGCAGGCGACAGCTTTATTGGGGCTCTGGCTTTTTACATGGCTCATTATCCAGCAATGCCAATGGAAGAGATGGCCAGAAGAGCAAACTTTGTCACAGCGGTGTCTGTACAAACTGTCGGCACTCAAACATCTTTTCCATTTCGGAAGGATCTGCCAACTGAACTATTCTGAAGGTGACCCCGAGGTTCTTGGCTTTTAAAAAGACATAACACATCAATCTGTGCACATTGTCTACACAATTGTTTTTATAACCAACAATACTAGAGCTCTTCATGATGTAACTTCCGAGCATTATTCATTTTTGAATGAGCGTACCATTGTATGacccaaaacaatttttttttttttttttttaataaatcaatgcATCAAAAACTCTCAT

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0019303 D-ribose catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0006014 D-ribose metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004747 ribokinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway

ZFIN:

id description
ZDB-GENE-040625-112 Predicted to enable ATP binding activity; metal ion binding activity; and ribokinase activity. Predicted to be involved in D-ribose catabolic process and carbohydrate phosphorylation. Predicted to act upstream of or within D-ribose metabolic process and phosphorylation. Predicted to be located in cytoplasm and nucleus. Orthologous to human RBKS (ribokinase).

Ensembl:

ensembl_id ENSDART00000030622

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024969 lncRNA downstream 96435 40898975 ~ 40903400 (-) True XLOC_012298
TCONS_00024968 lncRNA downstream 259894 40729231 ~ 40739941 (-) True XLOC_012296
TCONS_00024967 lncRNA downstream 260103 40729231 ~ 40739732 (-) False XLOC_012296
TCONS_00024966 lncRNA downstream 280452 40718915 ~ 40719383 (-) True XLOC_012295
TCONS_00024546 lncRNA downstream 281727 40716916 ~ 40718108 (-) True XLOC_012294
TCONS_00024970 lncRNA upstream 232599 41314405 ~ 41316741 (-) False XLOC_012301
TCONS_00024971 lncRNA upstream 232599 41314405 ~ 41316810 (-) False XLOC_012301
TCONS_00024972 lncRNA upstream 232599 41314405 ~ 41316816 (-) True XLOC_012301
TCONS_00024973 lncRNA upstream 300422 41382228 ~ 41403179 (-) False XLOC_012302
TCONS_00024205 lncRNA upstream 300422 41382228 ~ 41404908 (-) False XLOC_012302
TCONS_00024203 mRNA downstream 43800 40912071 ~ 40956035 (-) True XLOC_012299
TCONS_00024201 mRNA downstream 120727 40860016 ~ 40879108 (-) False XLOC_012297
TCONS_00024202 mRNA downstream 123155 40860062 ~ 40876680 (-) True XLOC_012297
TCONS_00024200 mRNA downstream 602083 40211155 ~ 40397752 (-) False XLOC_012293
TCONS_00024199 mRNA downstream 889053 40109059 ~ 40110782 (-) True XLOC_012292
TCONS_00024208 mRNA upstream 393800 41475606 ~ 41798856 (-) False XLOC_012303
TCONS_00024210 mRNA upstream 395528 41477334 ~ 41798856 (-) False XLOC_012303
TCONS_00024209 mRNA upstream 395528 41477334 ~ 41798856 (-) False XLOC_012303
TCONS_00024212 mRNA upstream 406672 41488478 ~ 41798856 (-) False XLOC_012303
TCONS_00024211 mRNA upstream 406672 41488478 ~ 41798856 (-) True XLOC_012303
TCONS_00024191 other downstream 1358037 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 1467906 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 1850152 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 2012420 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024174 other downstream 3609718 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024224 other upstream 1743485 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024257 other upstream 2768956 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 2977005 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 3401684 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 4058523 45140329 ~ 45151793 (-) False XLOC_012349

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_00166353_00175279.mRNA True 686 mRNA 0.46 5 CI01000189 166348 ~ 175450 (-)