RNA id: TCONS_00024209


Basic Information

Item Value
RNA id TCONS_00024209
length 6214
RNA type mRNA
GC content 0.52
exon number 41
gene id XLOC_012303
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 41475606 ~ 41798856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTGTCCTCACAGGGGGATTTTTTTCAGCGGATCTGGCGCCCTGccgtcggtcggtcagtcagtcaggcagCTGCTGCTCTTCACACTTACAAACAGAAGAGGCACACAGGTCTGAATGGTGAAAGGAAGGTAAAACCGGCTACAAAATCGCCTTTTATAGCGGAATGTTCACTCGAAGGGTTTATGGAGACGTCAAGAAATCTACACAGAAAGTTCTGGACCCAAAGAAGGATGTTTTTACGCGTCTGAAGCATCTGCGCGCGCTGTTAGATATTATCGACAGGAATGAACTGAAGGCTTTTTTTGAAACCAACTGCTCACAGATCTATTTTATCTTCTATGAAAATTTCATTACACTGGAAAGTAACTTAAAACAAAAAGggAACAAATCTCAACGGGAGGAGCTGGACTCCATCCTCTTTATTTTTGAAAAAATCCTGCAACTTCTACCTGAGAAAATCAACAGTCGATGGCAGTATCACAGTATAGGTTCTATACTCAAAAAACTTTTGCACACTGGAAACTCTTTTAAGatCCGCTGTGAGGGCATGCGTCTGTTCCTGCTCTGGCTGCAGGCTTTACAGAATCACTGTGCTGAAGAGCAGCTTCTCATCTTCGCCTGTCTGATCCCAGGATTCCCTGCTGTACCCTCATCTAGAGGACCCTGCACACTGGACACCATCATATACAACCCCTTCTCCAACCCACCCGATGCTAAGATTGTGCCAGAGGAGATCACTCCGCTGGTGCCTGCAGTTCCTGGAGAGAAGGTGGCGGACGACCACACCTGCTCTGTCCTGCAGATCGTGCTGAAGGTCATAGTTCTCCAGGCATCCAGCTTGGACTGGAAAAACAAAGAGAACCAGGACACAGGCTTCAGATTTCTCTTTTCCCTCTTCAAGAAATACTACCTGCCTCACCTCTTCCCCACTTTCTCAAAACATACCAACCTTTACAAGCCACAGTTAGATCTTCCCATTCACAGACCAAAGCCCTTGTATGTTCCAGTGACTCGTAACAATGAGAGCACATACTGCACTAGGGATCAGTATCTGGCTCCTCGCGTGGCCTTCATCACGTGGCTCGTCAACTTCTTCCTGGAGAAGAAGTATGTGAACTCGACCACGAGCAACTCCAAGAATGGAGGAGAGGTCTTGCCTAAACTCATCCAGacTGTGACTGCAGGCAGTATCAGTCAGGAGAAGAGCACAGACTTAGAGCCCAACGGTCCTGTGGAGCAGGAGAAGAATCACTCTAACAGCAGCACCCTGTCTGACCGCAGGGGCAGCAACTCCAGCCTGTGCAGCATCGAGGAGGAGCACCGCGGCGTCTACGACATGGTGCAGGCCATCCTGCTCTCCACACGGGACAACGTCAATTTCGTCAATGAGGTCTTCCATCAGGCTTTCCTGCTGCCATCCTGTGAAGCTTCGGCCACTCGCAAGGTGATCAAGGTGTACAGGAAGTGGATTCTACAGGAGAAACCTGCTTTCATGGCTGAGCCTGAGACCACAAACCAGGAGGAAGATACAGAGGAAGAGCAGCTGGTCACAGAGACGGACAATGCACACATACAGGCCCTGGAAACTCATGGACACAAGAGATCGTCCAGCTGGGGGCGCACTTACTCCTTCAGCAGCGCCATCAGCAGAGGCTGCCTGACAGAGGAGCTCAACCTGGAAGTGAAGGCTGGTATCCAGTCTGCCCTACAGGTGTTTCTGACAAATTCTGCAAACGTGTTTCTGTTGGAGCCGTGTCAGGATGTGCCCAAACTGCTGGAAAATCAGCTGGAAGTGTGCAGAGCTGTGCTCAGCGTCTACCGCCACATAATTATGGAACAAAACATGAACCGGCAGACCTGGGAGCAGTTGCTGCAGGTGTTGCTGAGAATCACGGAAGCAGTGATGAAGAGACCGCAGGAGAACCAAAAGAAAGACACGTTCGCCCACAGCCTAGCTAGCATCCTCTTCAAAACGATCTTTGTAGCGTGGGTTCGGGCCAACCTGACTGTGTTCATCTCCCGGGAGCTGTGGGACGAGCTGCTGGCTGTGCTGTCCTCTCTTAGCCACTGGGAGGAGCTGGTGTTCGAGTGGGCCAGCATCATGGACTCCCTCACTGCGGTCCTGGCCCGTCACGTTTACGGCCTGGACCTCCACAACCTGCCGCTGGACAAACTCTCTGAGCAGAAGGAGAAGAAGCAGAGGGGAAGAGGAGTGATGGCGGATTCTCACAAGGTCTCAGAAGCGGGACGCTCTTTCTCCTTGAGCTGGAAGAACTCTGGAGATCAGGTTGGCGCTCAGGAGCCCATGAGGTTCCGCAGCGCCACGACCACTGGAACTCCAGCTGTAGAGAAAGCTCGCAACAACGTCAGGCAGAAAGCAAAGCGAAGTCAGTCTATCAGCAACTGTGTGCATCTTTGTGAGGCTTTGCCGGCCACTAAGAGTGTGCCCATGCTGCTCCACACTGTCAGCTCTTTCTTACCTGGCATCTCTCACAACTCTCACTGCTCTCACAGACTCTCAGATGTGGAAGAGTGTCAGCTGTCGGAGTGTGAGATGGGTGATGGTGACAGTCCTCTGCCCCGCAGCAGCAGCACCTCTGACATCACACAGCAAATCAACGACACCTTTACAGGTCAGAGGAAAGATGAGAGTATGGATCTGGTCAGATCATCTGTATCGGAGAGCAGCTCTGCAGGGACGAGAGAAAGTGACGCTCCAGTGATTCTGATTGAGCGAAGCAACAGTCCAGCAGATCTGGATTATCCAGCTGAAGGAGCTCCAGCTTTCTTGAAGATGAAACTCAGAGAGAAAAGTGAGAGTGTGAGCAGTGAGACGTCCAATGGCTATCTGAATGAGGCAGAAGTGGGTCTGCTGTCGTGGCACACGCTGGAGGAAGAGCCGGACTCTCCCTCGACTCAAGACGTGAGCATGAGCATGAGTGTTACAGCAGACACGGTGAGCCAGAGGAGTCTCCTGCTCAGCCACACTGAAGCACTGGCAGggtCTCCTCACTTTCCCCCAGTGTCTCCGGCTCTTCTGGTGCCTCATGGCTGCTGTGAGGGCCCTCAGCTCCTGGAGGATGCCATGAACATGCCTCAGCATCTGGACAGCAGTGAGTTTCTGGCTGATGACATCAGCATTATCGCCGGTGGCAGTTTGACTGGTTGGCATGCGGACTCGGCCTTCGTTCTCTGGAGGAGGATTCTGGGTATTCTTGGTGATGTGAACAGCATCCGCTGTGCCCGCATCCACGCCAAGGTCTTCAGTTACCTCTATGAGCTCTGGCACAAGCTGGCCAAGATCAGAGATAATCTTGGGATCAGagtggattcagacacagccATGGTCAAACCCTTGTTCATCCCTCCTCTGCGTATGTTGGCCTCCTGGCTCTTTAAGGCGACCATGCTGCCTTCAGAATTTAAAGCTGGGAAACTACAGGCGTATAAGCTGATCTGTGAGATGATGACCAAACATCAAGACGTGCTGCCCAACAGTGACTTCCTGGTGCATCTATACCATGTCATGCACAAAGGGTTCACAAGCGACGATCagGATGTGTTGAACACAATGATCAGGTGGTGCTCTCCTCGCTTCTTCTTTCTGGGTCTGCCGGGCTTCACCATGCTAGTGGGAGACTTCATCACCGCGGCTGCTCGCATCCTCAACACAGACTCCTTTGAGGCTCCACGAGTCGAGGCTCAGGCTGTTCTTGGTTCGCTGGTGTGTTTTCCGAACTTGTATCAGCAGATTCCCTCTCTTCAGTCTGTTCCTGGATCTGAGGATATCCTCGTTGGCAAAGAGGACATGAAGGACTATCTTGTGAACATTCTTTTGAAGACTGCACGCAGTGAGACATGTGAAGGAGCCAGgtgtgtggCGATCTGCGGTCTGGGTTTGTGGGTGTGTGAGGAGCTCAGGCAAACAGAAACCCATCATCAGGTCAAAGATGCCATCAACGTCCTCGGTGTCACGCTCAAGTTTGGGAATAAAGTGGTTGCCAACGTGGCGTGCGACATCTTTCAGCTACTGATTTCTCACTGGCAGCACTTACAAAGACTAGAACCTTCTCTTCCCAAAAGAATCATAGAGATTTTTGTAGCAACCGTAGCCTTTCTTCTGCCCAGCGCTGAACACTCAACTGTGGAGGCAGACAAGAAGTTAATGGTGTCTCTACTGCTGTGCCTGCTGGACTGGTGCATGTCTGTACCTCTCTCCATCCTGCTGGAGCCCATCACTATGCCTGTGCTGGACGACCCCACCTCCCAAAAGGCCCCGCTGCTCGACTACATTTACAGGGTGCTTCACACTTGTGTATCAGGGTCTAACCTGCACACTCAGCAGAGTCACTACCTCCTCAGCCTGGCTGATCTATCAACAGACTACGAACCCTTCCTTATGCTGGGCAATGTCAAGAGCTTTGAACCACCGGCCATACACAACGCCATGGGAGATTTTGGAAATCTCCTCACTGTGGCTGAAGAAAAGAAAAGGAGAAGCATGGAACTGATACCCCTAACTGCTCGCATGGTAATGACACACCTGGTCAATCATTTGGGCCACCATCCTCTGAGTGGCGGCCCGGCCCTCTTGAACAGCCTGATCAGCGAGAACCACGACAACCCCTATGTAGAGTCTTCAGAGCTCTCATCTGAGGTCTTCAAAAGCCCCAATCTGCAGCTCTTCGTCTTTAATGACAGCACGCTCATTTCATACCTGCAGATCCCCTCTGATAATTCCAACACTGCTCCGCTAAGTGCCAACCCCAGGGATCATTCCTCTGAGGTCCGCATCATCATTCGGGACATCTCAGGCAAATACTCATGGGACAGTGGCGTTCTCTTCCGCACTTTAGATGGCACCGGTGTGACTTCCAGCGACAGCAGAGAACAGTCTTCTCATGAAGCTGCTCGATTAGAAAAGCGGAGCTCTGTCCGCTTCAGTAAATGTTCATCAGAGCTGGACGTGGAAGATGGCGTTGATGTGCTGGACCAGCTCCTGGAGGACCTCGGCCACAGCAGTCCCGAGTGTCTGCCGGAACCCCAGCTCAGACTGACCCAGCCACCATCTCCACCCATGGGCATGAACCTGGAGATAGAAGGGCTCATCATGGAGGCCGTCCACCGACAGTCAAAACAGGAGGAAGAGGAGTTGATGCGAAGGCAAATCGAAGACCCCAGTGTCAGAGCAGAGAGGCAGAAAGAGCCCACACATCAGGAGCCCAAATCCCCTTTCTACCTATGCAGACTCCTCCTCAATGACCTCGGCATGAACTCATGGGATCGCAGAAAGAGCTTTCATCTCCTGAAGAAGAACTCCAAGCTTTTAAGAGAGCTGAAGAATTTGGACTCGAGGCAGTGTCGAGAGACACACAAGATAGCAGTCTTCTATATTGGAGAAGGACAAGAGGACAAATATTCCATTCTGTCCAATACACAGGGCAGTCAGGTTTATGAGGACTTTGTCTCTGGACTGGGATGGGAGGTGAATCTGGCCACTCACTGTGGGTTTATGGGTGGTTTGCAGAGAAATGGCAGCACAGGAAGCACAGCTCCATATTACGCTACCTCCAATGTGGAGGTCATCTTCCACGTGTCCACTCGGATGCCTTCTGACTCTGATGACTCCATCACTAAAAagCTTCGTCACTTGGGAAACGACGAAGTGCACATCGTGTGGTCGGAGCACACGCGGGATTACAGGCGAGGAATCATCCCCACCGACTTTGGAGATGTCCTCGTCATCATCTACCCCATGAAAAACCACATGTTCTTTGTTCAGATCATGAAAAAACCCCAGGTTCCTTTTTTTGGGCCTCTGTTTGATGGGGCGATAGTGACTGGAGAGTTGTTGCCGAGTTTGGTGCGAGCCACGTGCATCAATGCCAGCAGGGCCGTGAAGTCTCGTCTGCCACTCTACCAGAGTTTTTATGAAGAAAGAGCGCTGTATCTGGAGGCCATCATTCAGAACCACAAGGAGAACATGACCTTCGAGGACTTCGCTGCTCAGGTCTTCTCTCCATCTCCCAGCTACTGGCCTTCTGGAGGTGCAGGATCCCTCAGCTGCAGCACGAGCGCTGACCTCAGTGTTTCTGTGATGACCAATGACTCTGGTGACCAGGTTTCACCCACAATACCACGCGCTACCAAGAACCGGGTTTCTGGAAAACTGCGGCGCTCAGCTAGTGCCATCAGCAAATCCTCCAACTGA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131122-56 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity and regulation of small GTPase mediated signal transduction. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human RALGAPA2 (Ral GTPase activating protein catalytic subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000180172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024206 lncRNA downstream 48408 41397833 ~ 41428926 (-) False XLOC_012302
TCONS_00024207 lncRNA downstream 57062 41407238 ~ 41420272 (-) True XLOC_012302
TCONS_00024974 lncRNA downstream 57085 41382228 ~ 41420249 (-) False XLOC_012302
TCONS_00024205 lncRNA downstream 72426 41382228 ~ 41404908 (-) False XLOC_012302
TCONS_00024973 lncRNA downstream 74155 41382228 ~ 41403179 (-) False XLOC_012302
TCONS_00024975 lncRNA upstream 293478 42092334 ~ 42092836 (-) True XLOC_012304
TCONS_00024547 lncRNA upstream 368331 42167187 ~ 42176988 (-) True XLOC_012306
TCONS_00024548 lncRNA upstream 462989 42261845 ~ 42272598 (-) True XLOC_012308
TCONS_00024976 lncRNA upstream 741998 42540854 ~ 42564114 (-) False XLOC_012310
TCONS_00024977 lncRNA upstream 741998 42540854 ~ 42564152 (-) False XLOC_012310
TCONS_00024204 mRNA downstream 395528 40999835 ~ 41081806 (-) True XLOC_012300
TCONS_00024203 mRNA downstream 521299 40912071 ~ 40956035 (-) True XLOC_012299
TCONS_00024201 mRNA downstream 598226 40860016 ~ 40879108 (-) False XLOC_012297
TCONS_00024202 mRNA downstream 600654 40860062 ~ 40876680 (-) True XLOC_012297
TCONS_00024200 mRNA downstream 1079582 40211155 ~ 40397752 (-) False XLOC_012293
TCONS_00024213 mRNA upstream 296391 42095247 ~ 42097267 (-) False XLOC_012305
TCONS_00024214 mRNA upstream 296698 42095554 ~ 42097267 (-) True XLOC_012305
TCONS_00024216 mRNA upstream 409767 42208623 ~ 42213822 (-) False XLOC_012307
TCONS_00024215 mRNA upstream 409767 42208623 ~ 42213822 (-) False XLOC_012307
TCONS_00024217 mRNA upstream 412088 42210944 ~ 42218652 (-) True XLOC_012307
TCONS_00024191 other downstream 1835536 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 1945405 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 2327651 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 2489919 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024174 other downstream 4087217 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024224 other upstream 1026435 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024257 other upstream 2051906 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 2259955 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 2684634 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 3341473 45140329 ~ 45151793 (-) False XLOC_012349

Expression Profile

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