RNA id: TCONS_00024969


Basic Information

Item Value
RNA id TCONS_00024969
length 3962
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_012298
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 40898975 ~ 40903400 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTAATGATCCAAAAACACTCAAGCAACCACAAATTAGAGACAGAAGCAAAATGTCTATTTAAGTAGACatacacacaaaatacaaaaagtcTCCAAGCAAATGGAGAATTCAATAGAACTAAAAGTGATGGACAAACTGAGAGAGACCAGTGAATAAGTAGGCCTAAAAAAATCCAAGCCAGCTCACACTCTCACACATCACCAACAGTCACTCTTCATTAATATGAAGAAACAGCGAATACACACAAATGATGTGCACAGAGCTCACTTTCACTGCCttttatgcaaacacacacacacagacggacTGATTCATTAACAGCTTGCTCCCAATCCTAGAATGCCAAGGAAGTGTCCAGATGGCTGGTAAAGCCACCTCTCTCTGAGGAGGCATCGTTAGTAGTCAACAGAACTGCATCCAAAAGCGAGCTCTTGCCATACAGTGTGTGTGTCcactcagccaatcagagcagggagTGTGTGCAGGGATGACCAAACAGCCAACGGAGTGGTCAATGAGTTTGCTttatgggatagttcacccaaaaatgaaaatttcctgttAACTTACTCCCCCAATAGGTCATCCATATGTAGATCCGTATAATGCTTTCAATGGTGgtagattaaaaataaagacaTACAAACAACTCCAAATCAATAGCCATGGCTTCTGATGACACATTGACGCCTTCTAAAGTAAAACGATCACTCTGTGTAAAAAATTAAacagtatttacattattatGAATCTTAATCCACAGCCTGGTCAAACTGTTCACAGCATGTCTAAATGTAGTCCTGACGTTTTGATGACAAATACATGAGGATTAGTGACAAAATCTCCGATATGAATTGATTATGTACAGCAGGCTTTAAATTTTGAGAAATGCCCTGTGAAAATAACATGACCTGACACGTTACAGGGTCTGAAAGGTTTAAAGCAACAGGAATACAACTGGACTACATTCGCATAATCGCGCCAAGATCTGTTCGACCAAGCTGTGGATTGAAGCTAATCTTGTAAATAATGTCCACAGACTGATTGTTTGGCTTCAGAGGACCTCTGTGTCATCAGGAGCCATGGCTATTGATTTGGACTTGTTTGtacgtgtttatttttaatctcaaaaGACTGTCCCCATTGACTGCCATTAAAAGATTCACAACAGATTGATAGAAAAATAGTCTTTAATGATCTACTGAAGAAAGAAAGGGCACCTAGATCTCAAATGACCTGTAGATGAGTacattcatttttgtgtgaactgtccctttaagattatttaaaatgatcccAGAACGGAAATTTGTGGCTAGAGATTTTTGTCACCAACGACAGTGATCAAACAACTGACATGATATTGTCATTAAGAAAATATAACgtcaaaatgaaatatattgtatCTGAaagaacagcaaaaaaataaaaataaatccaaaatacAGTTTGAGAAATCTTCTAGACCAGTGGAGCATTTTTGTTTTGCTAGCATATAGGACAGTATGCGGAAGTAAATGTTGATATAAACAACAATGAAAATAGACCTTTTTGCAaaccttaaagtgatagttcaccaaaaaaaaaaagaaatttatttcTTTAACTACTCCCCCTCACGttgttcaaaacacagtttaaGAAACTTTAGGTGTAaacgagagctccctcatcctccattttCAGAGAAGTACTGAAAAAACTCCTCAGAAACAGGTCATTATGCCTTCAGTGGATCAATCGGAATAATATCAagctaaaaaacacaaataatattgacagtttcttctcctcagtgtcagtatagggcgcaCACTCACATATCATGCTTACCACAAATACGCCCATGCTTTGTTTCAAACAGAGAAGGTTTTGCTTGAAAGTGGCACTTTAGAATgcgcacaatatactgacactgagaaaaagaaaatgttgaataaagttattatttttgttatatgtgTGTgataagtcaatagttacagacattcagctttcttcaaaaatatcGTCTTTAgagttcagcagaagaaacaaactcaaagATTTGGAATCACtttagggagagtaaatagtgagtgaattttcatttttgtgtgaacttttcATTTAAGCTTATTAAAATGATCCAAGAACAGAAAATTGTGACATGAGATTTTTGTCACCAATGACAGTGATCAAACAACTGACATGATATTGTCATTAAGAAAatataaagtcaaaataaaatatattgtatctGAAAGAgcagaaaaacaacaaataaaatcaaaaaaatcaGATTCAGAGAAATTAGTTCTTCTACACCAATGGAACATTTTTAATTTGCTAGCATATAGAACAGTATGCGGAAGTGCTGATCTAAAAATAGACCTTTTTGCAAATCTTAAattgttagttcacccaaaagtgaaatgATGTCATTAATTACTCCCACCTCATGTtgctcaaaacacaattaaagatattttaggtGTAAACCGAGTGCTCCCTcatcctcagtgtcagtatagggtgcacgCTCACATATTATGCTTAGATACGCCTGTGCTTTGTTTCAAACAGAGAGAGTTGCGCTCGGAACTGGAGCTTTTCAATGCGCACAATATACTCACACTAAGAATAAGAAAATGTtgaataatttgttatttttgttatatgtgtgcgataagtcaatggttacagattttcagctttcttcaaaacatcatctttagagttcagcagaagaaagaaactcaaagatttggAATCACtttagggagagtaaatagtgagtgaatttttatttttgggtgaactattcctttaatatcATCACAATCAACAAGGGGGAAGAAAAGTATATGTTTACCTGATGGAGGAACCCAAACACAGTAGTCTGGGTCATCCTCTGGGTACTTGGACATGGTCACGGGCGAGAAACAAGACTTTTGAATGTGCACAAAAAACTGACACTGAAAATAAGAAAACTTTTTTAGAAagtagttatttttgttttacgtgTGCGATAACGTTTTCTCATAATCTGATAATATTCCAATTGAAGCACTGAATGcaaactgtaaaaagcaattacttaataaagtttattttacttaaaaaataattaagtatttCTGTTGTAACACTTAGAAGTGTTAcatttacttgtttttaaaagtacatagctcattttctcaataatttgaaggcaatgtgtttactcactttttcaactaatcactttttatagTATAAAACTGCCTTGAATTTATTAGGTAAAAGAGCTATGTGCCTAAATCTAAACAAACAAGTTCAGTGAACTTAACCGGTTTAAGaattacttaaatgtttaaagtaaaatcaacttgtcacttttaaagAGAAGGATTTACTGTTTATTACAGTGTATGATCTGTTTTGAGGATGGTTCTTTTCTGAACTTTCAGCAAATAGGGGACCTTGCAGTCTATGGAagatgagggagctctcggatttcacctaaataacttcatttgtgtactgaagatgaatgaaggtctcaaaGATTTGAAAAGACATGGGGATTAccaattaataacataattttcattatttttgtggtgaactaaccctttaagcaaTGTCCACTCCAAAACTCTCCCAAAAACATCCTAGACATTTGGCTAACAGGCCAGTTGTGGAAAATGAATGCATTCGAATGAAAATCGCATGATGTGAAAATCAGTTTCCATGTCCAAATAACATCTGAGCTCATCTGTGCTGCTTGTGTTCCTCGATGTTCCTTGTATGGAGTGAAAACGCAGATGCAGAGAGAAAATGATGTTCACTTTTCGAAGTCTAGAACATGTGCCTCAAACTCGAtttctggagggctgcagctctgcacagttttggtcaaaccctaatcaaacacagctgatccaactaatcaaggtgctCAAGACTTTAAAGCAGGTGTGCGTTGAAGAAAGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024968 lncRNA downstream 159034 40729231 ~ 40739941 (-) True XLOC_012296
TCONS_00024967 lncRNA downstream 159243 40729231 ~ 40739732 (-) False XLOC_012296
TCONS_00024966 lncRNA downstream 179592 40718915 ~ 40719383 (-) True XLOC_012295
TCONS_00024546 lncRNA downstream 180867 40716916 ~ 40718108 (-) True XLOC_012294
TCONS_00024965 lncRNA downstream 386185 40289003 ~ 40512790 (-) True XLOC_012293
TCONS_00024970 lncRNA upstream 411005 41314405 ~ 41316741 (-) False XLOC_012301
TCONS_00024971 lncRNA upstream 411005 41314405 ~ 41316810 (-) False XLOC_012301
TCONS_00024972 lncRNA upstream 411005 41314405 ~ 41316816 (-) True XLOC_012301
TCONS_00024973 lncRNA upstream 478828 41382228 ~ 41403179 (-) False XLOC_012302
TCONS_00024205 lncRNA upstream 478828 41382228 ~ 41404908 (-) False XLOC_012302
TCONS_00024201 mRNA downstream 19867 40860016 ~ 40879108 (-) False XLOC_012297
TCONS_00024202 mRNA downstream 22295 40860062 ~ 40876680 (-) True XLOC_012297
TCONS_00024200 mRNA downstream 501223 40211155 ~ 40397752 (-) False XLOC_012293
TCONS_00024199 mRNA downstream 788193 40109059 ~ 40110782 (-) True XLOC_012292
TCONS_00024197 mRNA downstream 1012347 39877011 ~ 39886628 (-) True XLOC_012290
TCONS_00024203 mRNA upstream 8671 40912071 ~ 40956035 (-) True XLOC_012299
TCONS_00024204 mRNA upstream 96435 40999835 ~ 41081806 (-) True XLOC_012300
TCONS_00024208 mRNA upstream 572206 41475606 ~ 41798856 (-) False XLOC_012303
TCONS_00024210 mRNA upstream 573934 41477334 ~ 41798856 (-) False XLOC_012303
TCONS_00024209 mRNA upstream 573934 41477334 ~ 41798856 (-) False XLOC_012303
TCONS_00024191 other downstream 1257177 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 1367046 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 1749292 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 1911560 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024174 other downstream 3508858 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024224 other upstream 1921891 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024257 other upstream 2947362 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 3155411 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 3580090 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 4236929 45140329 ~ 45151793 (-) False XLOC_012349

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU247046 True 273 lncRNA 0.33 1 CI01000051 1134502 ~ 1134774 (+)
rainbow trout (Oncorhynchus mykiss) TU247046 False 2403 lncRNA 0.38 3 NC_048567.1 2849231 ~ 2853337 (-)
eurasian perch (Perca fluviatilis) TU247046 True 218 lncRNA 0.40 1 NC_053129.1 4914484 ~ 4914701 (-)