RNA id: TCONS_00024231


Basic Information

Item Value
RNA id TCONS_00024231
length 7386
RNA type mRNA
GC content 0.48
exon number 43
gene id XLOC_012318
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 43039463 ~ 43287290 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGCCTTTCGCAATTGGCGGGTCTCAGTTAACTAATGCGAGAAATCCATGTTCTCAGGTTTTGACATGTCACTAGAGCAAAACCAGCCGTCCGGTCAGAAGTAGAGAGGAGCTTCATTCCCCCGCACATGTCACAAGTAGACTTAAAGCCGATTTACAGCGTCCGAACTGAACTAAGCATCTGCCCCGACATTATGCAAACCTCCCAAAGTTGTGCACTTCTTCACCTGAATTGAGATGCGTCGTCGAAGCGTTTGTCGCCGGCCGGACGAAGCTGCGCGGACGGCGGACTGAGCGGATAAACGGGACTGGATGAATGTGACAGCTCGTCGCGTCGGTGAATGAAGAAGCACCAGCTACTCGCTTCTAAGCAAAACGCGTCCGAACATGGCTGACAGAACAGCTCCGAACTGTCATCTGCGACTCGAGTGGGTCTACGGCTACCGGGGACACCAGTGCCGCAACAACCTGTACTACACGGCCGCCAAGGAGATCGTCTACTTCGTCGCCGGCGTCGGAGTTGTGTACAACACACGGGAACACAAGCAGAAATTTTATTTGGGACATAACGATGACATAATCAGTTTAGCCCTGCATCCAGAGCGAGTGCTGGTGGCCACGGGACAGGTTGGAAAGGAGCCCTATATTTGTGTTTGGGACTCGTACACTGTGCAAACGGTGTCCATACTGAGGGACATGCACACACACGGCATCGCCTGTCTCGCCTTCGACCTTGATGGACAGTGTTTGGTGTCTGTGGGCTTGGACTCAAAAAACACAATCTGTGTGTGGGACTGGAGACAGGGGAAAGTTCTGGCTGCTGCTCCTGGTCATACAGACAGAATATTTGACATATCATGGGACCTGTATCAGCAAAGCAAGCTAGTGAGCTGTGGAGTCAAACATATCAAGTTTTGGAGTCTGTGTGGGAACGCTTTGACACCCAAGCGTGGAGTATTTGGGAAGACTGGAGACCTTCAAACTATCCTCTGTCTAGCCTGTGCGAGAGATGAGATCACATATTCAGGTGCCTTGAATGGAGACATCTATGTCTGGAAGGGTATCAATCTAATCCGGACAGTTCAAGGGGCTCATGGGtctggTATTTTCAGCATGAATGCGTGTGAAGAAGGCTTTGCTACTGGAGGCAGGGATGGCTGCATCCGCTTGTGGGACCTGAACTTCAAACCCATCACCGTCATTGACCTCAGGGAAACAGACCAAGGATATAAGGGCTTGTCAGTGCGTAGCGTGTGCTGGCGAGGGGATCATATTCTGGTGGGAACGCAGGACAGTGAGATTTTTGAAGTGGTGGTTCACGATCGCACCAAGCCCTTCCTCATCATGCAGGGTCACTGTGAGGGTGAGCTGTGGGCACTGGCTGTTCACCCAACCAAACCTCTTGCCATGACTGGGAGCGATGACCGCTCTGTTCGGATCTGGAGTCTGGTAGATCATGCTTTAATAGCACGCTGCAACATGGAGGAGCCCATACGCTGCGCTGCTGTTAGCACAGACGGCATTCACCTCGCTCTGGGAATGAAAGACGGATCCTTCACAGTGCTGAGAGTCAGGGACATGACAGAGGTGGTCCACATTAAGGACCGTAAAGAGGCCATCCATGAGCTGAAGTACTCCCCTGACGGAGCGCACCTCGCCGTGGGCTCCAATGATAACTCAGTGGACATCTACGGCGTTGTGCAGCGATACAAGAAGGTGGGCGAATGTGTGGGCTCCAGCAGCTTTATCACACACATGGACTGGTCCACGGACAGCAAGTATCTGCAGACAAATGACGGAAACGGTCGACGGCTCTTCTATCGGATGCCCAGTGGCAAGGAGGTGACCAATAGGGAAGAGCTTAAGCTGGTCCAGTGGTCTTCATGGACTTGTGTCCTCGGGCCGGAGGTGAACGGGATCTGGCCCAAATACTCTGATATCAATGACATCAACTCTGTAGATGCCAACTTCAGTAGTCAAGTTTTAGTAACAGCGGATGATTATGGATTAGTTAAGTTATTTCGGTACCCATGTATTAGAAAAGGTgcaaagtttaaaaaatatttagggcACTCAGCACACATAACCAACATCAGATGGTCACATGATTATCAGTGGGTGATTACTATTGGTGGAGCGGACCACTCGGTGTTCCAGTGGAAGTTTGTCCCTGAAAGAAAGTCAAAAGACACCCTTCATATAGCTCCTCAAGAGACGTTAATAGACTCACACAGCGAGGAATCTGACTCGGATCAGTCAGATGTGCCTGAGATGGACTCGGAAATCGAACAGGAAACACAACTTACTTATCGCCGACAGGTTTACAAAGAAGATCTACCTCAGCTTAAAGAGCAGTGTAAGGAGAAGCATCGAGCCATGGCCATGAAGAAGAGGGAAAGAGCTCCTGCCAGTGGAATGAGGTTGCACTTTATTCATGGTTATAGAGGTTATGATTGCAGAAGTAACCTCTTCTACACTCAGACCGGTGAGATTGTGTATCATGTGGCGGCTGTTGGAGTAGTGTATAACAGACAGCAAAACACACAGCGCTTTTACCTGGGTCATGATGATGACATCCTCTGTCTGGCCATCCACCCTGTTAAAGACTATGTAGCCACAGGCCAGGTGGGCCGTGATTCATCAATCCATATATGGGAAACAGAGTTTTTAAAGCCGTTGTCTGTGCTTAAAGGATTCCaccagtttggtgtgtgtgcacttgaCTTCTCAGCGGATGGGAAGAGACTGGCTTCCGTGGGTCTGGATGACAATCATACCATCGTCCTGTGGGAATGGAGGAAAGGAGAGAAGCTCTCCACCATTCGGGGAAGTAAGGATAAGATATTTGTTATTAAAATCAACCCCTACATGCCAGACAAGCTGATCAGCGCTGGAGTGAAGCATATGAAGTTTTGGCACCGAGCAGGTGGAGGATTGATCGGGAAGAAGGGCAGCATGGGAAAAACCGAGACCATGATGTGTGCGGTATACGGCTGGACTGAAGAAATGGTCTTTTCTGGAACCTGCACTGGAGACATCTGCATCTGGAGGGACATGTTCTTGGTGAAGACCGTCAAAGCTCACGACGGGCCTGTTTTCAGCATGCACGCGTTGGAGAAGGGTTTCGTGACTGGTGGAAAGGATGGAATAGTGGCTTTGTGGGACGATACCTTTGAAAGATGCCTCAAAACATATGCCATAAAACGAGCGGTGCTGGCCCCAGGCTCCAAAGGTTTGCTTTTAGAGGACAACCCCTCCATTCGTGCCATATCTTTGGGTCATGGACATATTCTTGTGGGAACAAAGAACGGAGAGATCCTGGAGGTGGACAAAAACGGGCCCATCACGCTCCTGGTTCAGGGTCACATGGAGGGTGAGGTCTGGGGTCTTGCCACACACCCTCATCTGCCTCTCTGTGCCACTGTGAGCGATGATAAGACCCTCCGCATCTGGGATCTTTCTCCAAGTCACTGCATGCTTGCCGTACGCAAACTTAAAAAAGGTGGGCGATGCTGCTGCTTCTCTCCGGATGGCAAAGCTCTGGCTGTGGGTCTCAATGATGGCAGTTTCCTCATCGTCAATGCAGACACTCTTGAAGACCTGGTGTCATTTCATCACCGCAAAGACATCATATCAGAAATACGCTTCTCTCCTGTAACAGGCAAGTATTTGGCTGTGGCTTCAGGAGACAGTTTTGTGGATATTTACAACGTGATGAGCAGCAAGAGGGTTGGCGTGTGCAAAGGCTCCATGAACTACATCACCCATCTGGACTGGGACAAGAGAGggAAGCTTTTGCAGGTCAACACTTCAGCAAAGGAACAGCTATTTTTTGAGGCTCCTCGTGGGAAGAAGCAAAGCATTCCAGTCACAGAGGTGGAAAAGATCGACTGGAGCACTTGGACATGTGTGCTTGGGAGCTCCTGTGAGGGAATTTGGCCTGTGGTCAGTGAAGTTACTGAAGTAACCGCTGCCTGTCTTAGCTATGATAAGAAGCTGTTAGCAACCGGGGACGACCTTGGATATGTCAAGCTCTTCAAATATCCAGTCAAgGGAAAATATGCCAAGTTTAAACGGTACATGGCCCACAGTACCCATGTGACTAATGTGCGCTGGTCACACGATGACTCTTTGCTGGCATCGGTGGGCGGCTCTGACACCTGTCTAATGATCTGGAACCACGAGACCGAGAGCTGCAGAGAGGCCAGACAGTGTGACAGCGAAGAGTCAGACATCGAGAGCGAAGATGATGGAGGCTATGACAGTGATGTAACGAGAGAGAACGAGATTGTCTATGTAATCAAAGCCTTATCTACAAACATGCGACCCATGACGGGGGTCAAGCCCCATTTACAACAGAAGGAGCCAACTGTAGACGAAAGGGGCTCAAGACCCCCAGTGAGCAGGGCTCCACCAATGCCAGAAAAACTACAAACCAACAATGTGGGCAAGAAAAAGAGACCAATTGAGGACCTGGTGCTTGAACTGGTGTTTGGTTACCGAGGCAACGATTGCCGTAACAATGTGCATTATCTTAATGAGGGGGCAGACATCATTTACCACACCGCCTCAATAGGGGTCGTCTTAAACTTAACAACAGCCTGTCAGAGTTTCTATTTGGAACACAGTGATGACATTCTGTGCCTGACTATAAATCAGCATCCAAAGTTCCCCAATGTGGTGGCAACTGGCCAAGTAGGTGATACTGGTGATATGTCAGCCACCTCTCCTTCAATCCACGTGTGGGAAGCCATGAACAAACAGACCCTCTCTGTGCTTCGCTGCCATCATTCTCGGGGCGTTTGCTCTGTAAGCTTTAGTGCCACAGGCAAACTGCTGCTTTCTGTGGGTCTGGACCCCCAGCACACCCTCACCATCTGGAAGTGGCAGGAAGGTGCCAAAGTAGCAAGTCGAGCTGGTCACACTCAGCGGATCTTTGTGGCAGAGTTCCGACCTGATTCGGACACTCAGTTTGTATCAGTGGGGATAAAGCATGTGCGGTTCTGGACGCTGGCCGGAAGGGCTCTGCTCAGTAAGAAAGGAGTGCTCAGCTCTATTGAAGATGCCCGTATGCAGACTATGCTCTCAGTGGCATTTGGAGCTaaTAACTTGACATTTACAGGTACCATAAGTGGAGATGTGTGTGTATGGAAGGAACACATTCTAGTGAGAATCGTGGCTAAGGCTCACACTGGACCTGTATTTACCATGTACACCACATTGCGTGATGGGCTCATTGTGACGGGAGGAAAAGAACGACCGTCTAAGGAAGGCGGTGCGCTCAAACTGTGGGATCAGGAGCTGAAGAGATGCAGAGCCTTCAGACTGGAGACGGGCCAGGTCATAGACTGTGTGCGCTCTGTCTGCAGGGGAAAGGGGAAGATTCTGGTTGGAACTCGTAACGCTGAGATCATTGAGGTCGGTGAGAAGAACGCAGCATGTAACATTCTGGTGAACGGTCACATGGATGGTCCTGTCTGGGGTCTTGGAGCCCACCCGACCCGGGACGTCTTCCTGTCTGCTGCAGAGGACGGCACTGTGCGCCTCTGGGACATTTCACAGAGGAAGATGCTGAATAAAGTGAACCTCGGTCATCCGGCACGAACCGTCAGCTACAGTCCAGAGGGCGACATGGTGGCCATCGGCATGAAGAATGGAGAGTTCATCATCCTACTTGTCACCTCGCTCAAGATTTGGGGAAAGAAGAGAGATCGCCGCTCTGCCATACAGGATATCAGGTTTAGTCCAGACTCGCGTTATCTGGCTGTTGGTTCCAGTGAGAATGCTGTGGATTTTTATGACCTGACTTTAGGCCCACAGCTGAACCGCATCAACTGCTGTCGGGACATCCCAAGCTTTGTCATGCAGATGGACTTTTCTGCAGACAGCTGCTTTGTGCAGTTGTCCACTGGTGCTTATAAACGTGTAGTCTACGAGGTGCCTTCTGGTAAACAAGTCACTGAACAAGCAGTGATCGACCGAATAACCTGGGCCACGTGGACAAGTGTCCTAGGGGATGAAGTGGTGGGGATCTGGTCCAGGAACACAGATAAAGCTGACGTGACCTGCGCCTGTGTGTCTCACTCTGGCATCAACATCGTCACCGGTGATGACTTTGGAATGGTGAAGCTGTTCGACTTTCCATGTCCAGAGAAATTTGCCAAACACAAGCGTTTTCTGGGCCACTCTGCACACCTGACCAACGTCCGCTTCACCAATGGGGATCGCTTCGTGGTCAGTGCTGGAGGCGATGATAGAAGtctGTTTGTATGGCGGTGTGTCCACACTCCTCACTGAGATCCCGCTGTGTCCTCGCTCTGCCTCAAAAGCATCTCCAGTCCAGCTGACAGCATgagtgcacacacactcacagagatCTTTACACAGTCTTACAGCAGATGCATGAGCCGTCGTCACCCATTCTGAATGATAGTTGGGTGTCACACGACCCAACATACTGTAAAAGATCCATCAGACGTGTATGTGTTTACCCTTcacttttatttgtcttttttaaagaaagaaaaaaaaaatagagctacAAGTCATTTATTTTGGATTCCGTCTGTATTGATGTTTAAAAGAGTTTCTTCCGAATGAAAAAGAACTTGTAGCAAGCTAACAACAATTAGCCTTAAACTACCCGTTgcgtgttttttatttattattcttcattTAGGTGTGGTGTTTTTGATATTATATTCTGTTTTCTGTCGTCTTCATTTCTGGTGGTTGTTTTCAAGGTTTCATGGATCTCCTGTGGCCTTCTCCCTGAATGTAACACTGGCGTTATATTCTAGGATGTCAGCATGCCAAAGCATTCTATGCACTGTATACTTGACCTGCTCACTGTGGTAGTCCAGTGGTCTTTTCATGTCCATCTTGAACGTGATCTCCCTAAACAGTAGAAGACACTCCTAACCTCATATGTAGCAACTCTAGCTTGATTAGTGAACTTGAGACGTCTGTTCGTGTGAGTAGGTATGAGCTTTGTGTTTCATGTCAGGGATCAAAgtttaaaagaagaagaaaaaaaaactaatgcaaTTCCTCAGAAAACGAATGAAGAGTTTGTTTCAACGCTGTCTTATCTGAAATCACTGTTCATGTTGCTGCTGAAGCCTTTATGACATCAcatcatttatttgattattctgatgttttttattgtttttgttggaCTTTACTAATCTGGATTGTCCAAGTTCAGCGTGAACTGAAACAAAATGCAACCTTGTCTCTGGTTCATTCTGATTGAAAGAGATGTGCTTAATGCATCTTTTAATTTTCTTGTAAATATCATTTGTAAAGACattcttttgtatatttttgtgaaatgtttcttaaaggccaactttaataataaaaaaaaagatgtacaCATAA

Function

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

Ensembl:

ensembl_id ENSDART00000156885

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024229 lncRNA downstream 7639 43030534 ~ 43031824 (-) False XLOC_012317
TCONS_00024977 lncRNA downstream 475311 42540854 ~ 42564152 (-) False XLOC_012310
TCONS_00024549 lncRNA downstream 475311 42545940 ~ 42564152 (-) False XLOC_012310
TCONS_00024219 lncRNA downstream 475329 42561960 ~ 42564134 (-) True XLOC_012310
TCONS_00024976 lncRNA downstream 475349 42540854 ~ 42564114 (-) False XLOC_012310
TCONS_00024237 lncRNA upstream 78704 43365994 ~ 43399919 (-) True XLOC_012320
TCONS_00024242 lncRNA upstream 237964 43525254 ~ 43532894 (-) True XLOC_012324
TCONS_00024979 lncRNA upstream 354527 43641817 ~ 43649433 (-) False XLOC_012328
TCONS_00024980 lncRNA upstream 354527 43641817 ~ 43649494 (-) True XLOC_012328
TCONS_00024255 lncRNA upstream 421109 43708399 ~ 43718395 (-) True XLOC_012330
TCONS_00024228 mRNA downstream 7635 43030317 ~ 43031828 (-) False XLOC_012317
TCONS_00024230 mRNA downstream 7700 43030687 ~ 43031763 (-) True XLOC_012317
TCONS_00024227 mRNA downstream 16995 43021662 ~ 43022468 (-) True XLOC_012316
TCONS_00024226 mRNA downstream 27073 43005428 ~ 43012390 (-) True XLOC_012315
TCONS_00024225 mRNA downstream 51107 42983983 ~ 42988356 (-) True XLOC_012314
TCONS_00024234 mRNA upstream 10166 43297456 ~ 43400039 (-) False XLOC_012320
TCONS_00024235 mRNA upstream 10562 43297852 ~ 43391499 (-) False XLOC_012320
TCONS_00024236 mRNA upstream 26424 43313714 ~ 43399896 (-) False XLOC_012320
TCONS_00024238 mRNA upstream 123463 43410753 ~ 43428397 (-) True XLOC_012321
TCONS_00024239 mRNA upstream 143075 43430365 ~ 43466317 (-) True XLOC_012322
TCONS_00024224 other downstream 196600 42825291 ~ 42842863 (-) True XLOC_012313
TCONS_00024191 other downstream 3397665 39641681 ~ 39641798 (-) True XLOC_012284
TCONS_00024190 other downstream 3507534 39531815 ~ 39531929 (-) True XLOC_012283
TCONS_00024189 other downstream 3889780 39149567 ~ 39149683 (-) True XLOC_012281
TCONS_00024188 other downstream 4052048 38987296 ~ 38987415 (-) True XLOC_012280
TCONS_00024257 other upstream 563472 43850762 ~ 43863624 (-) True XLOC_012331
TCONS_00024261 other upstream 771521 44058811 ~ 44058927 (-) True XLOC_012333
TCONS_00024269 other upstream 1196200 44483490 ~ 44483617 (-) False XLOC_012339
TCONS_00024283 other upstream 1853039 45140329 ~ 45151793 (-) False XLOC_012349
TCONS_00024305 other upstream 3382717 46670007 ~ 46670103 (-) True XLOC_012361

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000315_00042968_00082266.mRNA True 4716 mRNA 0.50 31 CI01000315 42968 ~ 82498 (-)
bowfin (Amia calva) AMCG00000474 True 6242 mRNA 0.52 36 CM030141.1 15352977 ~ 15384001 (+)