RNA id: TCONS_00025148


Basic Information

Item Value
RNA id TCONS_00025148
length 1487
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_012562
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 5813996 ~ 5830414 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCGCTTTGGACCCCGGAAGTGTGTGTGACCCTCATCTTTATTTCTCACCCATGAAAGCCTTCAAAAAGCCCCAGAAATGAAATGATAGATTTACATTTGGCCCTCGCCCATCTGAGAATCGCAGCTGGAGGATCAAATCTCATTTCGGAGGCGGCTCCAGATTGTGGATGCCATTGAATTCAAACCCAGCAGGGTTTGAAAGGATGTCATTGTGAGGGACGCACTGTGTGGAGAGAATGCAGTCTTCAGGACAGCGGTTGAGGGATGTGGAGCAGCACCAGCCTCTGCTCAGTGGAGGGGAAGAGGAGGTGACGGCCGGCCGCGTCTGGTTCATCCAGGACAGCTGCGGGATGGTATGCGCCTTCATGACCTGGTCCCTAGTCATGTACGCTGAATTCGTGGTGAACTTTGTCATGCTGCTCCCCTCCAAAAACTTCTGGTACACTCTAATCAACGGCGTGGCGTTTAACTTTCTGGCCGTGCTGGCGCTGACGTCGCACCTGAGGACCATGCTGACAGATCCGGGTGCAGTTCCCAAAGGAAACGCCACTAAGGAATACATGGAGAGTCTGCAGCTGAAGCCTGGAGAGGTCATTTACAAATGTCCCAAGTGCTGCAGCATTAAACCAGAGAGAGCACACCACTGCAGTATCTGTAAGAGATGCATCAGGAAGATGGATCATCACTGTCCTTGGGTCAACAACTGTGTGGGCGAAAACAATCAGCGATTCTTTGTCCTCTTCACTATGTATATAGCCTCCATTTCATTGCATGCCCTGTGTCTGAGTGGTTTCCACTTCTTCACCTGTGTCAAAGTCCAGTGGAACGAGTGCAGTGATTTCTCTCCACCTGTGGCAGTAATGCTGCTGATTTTCCTGTGTCTGGAAGCACTACTGTTTCTCACATTCACTGCCGTCATGTTCGGCACTCAGATTCACTCCATCTGTAACGATGAGACGGAGATCGAGAGGCTGAAGAATGAAAAGCCCACGTGGGAGCGGCGGGTGCGATGGGATGGAATGAAGGCAGTTTTCGGCGGACCACCGTCGCTGCTGTGGTTCAACCCTTTCGCTGGACTGCGTCTCCGTATGCTGATGGTTCGAGCCCGCAGGAGCGGAGCTGAGTTTTCTGTTTGAGCGAGGAAAGCTGCCGTCTGCCTTCATGCCTACTTTTTCCCCTTCTCATAGGACACAGGACTCCTTGTTTAAGCAGGTCTGGAGGTAAAAAACCCTGTTCAATAACTGATGTGGCCCCTGGAACATTGAGGCTGCGTCTCGATACAGCATTATTACCTCGTACGGCGGATCATACTCGTAATGCTCATCTCGTCTTTATGAACATTCACACTCATGGGTCTTTAAATTGCTTCGTAAGTGGACTTTTTTTGTGGTTTTACGGAAAGGGTGTTAATATTCATTATCCAGCCTGAAGAAATGCATCATCTGTGTGATTTAAAGGTTATTATAAAAGAAATAGATTATAAACC

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:1903076 regulation of protein localization to plasma membrane biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019705 protein-cysteine S-myristoyltransferase activity molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-346 Enables S-acyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC7 (zinc finger DHHC-type palmitoyltransferase 7).

Ensembl:

ensembl_id ENSDART00000020233

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027037 lncRNA upstream 136630 5672914 ~ 5677366 (+) False XLOC_012561
TCONS_00027036 lncRNA upstream 136630 5672914 ~ 5677366 (+) True XLOC_012561
TCONS_00027033 lncRNA upstream 146380 5658327 ~ 5667616 (+) False XLOC_012560
TCONS_00027034 lncRNA upstream 146380 5658481 ~ 5667616 (+) False XLOC_012560
TCONS_00027035 lncRNA upstream 146380 5659340 ~ 5667616 (+) True XLOC_012560
TCONS_00027038 lncRNA downstream 6684 5837098 ~ 5839834 (+) True XLOC_012563
TCONS_00027039 lncRNA downstream 919640 6750054 ~ 6757446 (+) False XLOC_012578
TCONS_00027040 lncRNA downstream 919973 6750387 ~ 6757446 (+) True XLOC_012578
TCONS_00027041 lncRNA downstream 950076 6780490 ~ 6785702 (+) True XLOC_012579
TCONS_00027042 lncRNA downstream 1103610 6934024 ~ 6936237 (+) True XLOC_012581
TCONS_00025147 mRNA upstream 172266 5618368 ~ 5641730 (+) True XLOC_012559
TCONS_00025144 mRNA upstream 256936 5543719 ~ 5557060 (+) False XLOC_012557
TCONS_00025145 mRNA upstream 261787 5547185 ~ 5552209 (+) False XLOC_012557
TCONS_00025146 mRNA upstream 263749 5549672 ~ 5550247 (+) True XLOC_012557
TCONS_00025143 mRNA upstream 266288 5543677 ~ 5547708 (+) False XLOC_012557
TCONS_00025149 mRNA downstream 20423 5850837 ~ 5859484 (+) True XLOC_012564
TCONS_00025151 mRNA downstream 44854 5875268 ~ 5912156 (+) False XLOC_012565
TCONS_00025150 mRNA downstream 44854 5875268 ~ 5912156 (+) True XLOC_012565
TCONS_00025152 mRNA downstream 87211 5917625 ~ 5969245 (+) True XLOC_012566
TCONS_00025153 mRNA downstream 208727 6039141 ~ 6082443 (+) False XLOC_012567
TCONS_00025142 other upstream 274422 5531522 ~ 5539574 (+) True XLOC_012556
TCONS_00025141 other upstream 274541 5528981 ~ 5539455 (+) False XLOC_012556
TCONS_00025134 other upstream 536005 5277875 ~ 5277991 (+) True XLOC_012549
TCONS_00025129 other upstream 810612 5003269 ~ 5003384 (+) True XLOC_012542
TCONS_00025128 other upstream 1041938 4771136 ~ 4772058 (+) True XLOC_012541
TCONS_00025158 other downstream 470194 6300608 ~ 6305665 (+) False XLOC_012570
TCONS_00025159 other downstream 470202 6300616 ~ 6305606 (+) False XLOC_012570
TCONS_00025160 other downstream 470632 6301046 ~ 6303556 (+) True XLOC_012570
TCONS_00025162 other downstream 566357 6396771 ~ 6400268 (+) True XLOC_012571
TCONS_00025165 other downstream 694362 6524776 ~ 6524890 (+) True XLOC_012573

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_12284334_12294513.mRNA True 1827 mRNA 0.43 8 CI01000013 12283582 ~ 12294513 (-)