RNA id: TCONS_00025149


Basic Information

Item Value
RNA id TCONS_00025149
length 2210
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_012564
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 5850837 ~ 5859484 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCTAATCATGGCTGCCGTAGACGTGGAAGATGAGAGTATCCTGGCTTCAATATTTAAAGATAGTTTTCCCGAGAATTGGAGGGAAAATCCGGATTTCGCCGCGTATCTGTCGCAGCTGAGCGCCTGCGGCGTGGATGAGCTGACGCGCGAGCCCGAGCGCCTGTCAGAGGAGCGCGCGCAGATCCTCCAGCAGACCCGAGAGCTGGCCTTCACTAACTACAAGACTTTCATCAGGACTGCTGACTGCACACAACACATCTACACTGACTTCAGCACAGTGGAGAACTGCCTATCTAAACTGCTGCACAAGCTGCCCAGCTTTACCGAGAAATGCAGAGGCTTTATTAAGGAGGCCGATGAGATCAGCGTCAGCAGGCGTATGAACAGCCTGACACTGAATCGACACACTGAGATCTTGGAGATTCTGGAGATTCCTCAGCTGATGGACACGTGTGTTCGTAACGGATATTATGAAGAGGCGCTGGAGCTGGCCGCGTATGTCAAGAGACTGGAGAAGAAACATTCCTCTCTTCCTGTCATTCAGGGAATTGTGCACGAGGTCCGACTGTCCGCTCAGCTCATGCTCAACCAACTTCTTCAACAACTGCGCAGCAATTCGCAGCTTCCAGTCTGCCTGCGTGTGATTGGCTACTTGCGTAGAATGGACGTTTTCACCGAAGCCGAGCTGCGCGTCAAGTTTCTGCAAGCTCGCGGAAGTTGGCTGCGATCAATTCTCACCGCCATCCCAGATGAAGACCCATATTTCCACATTACCAAAACCATCGAAACCTGCCGGGTGCACCTCTTCGACATCATAACCCAGTATCGCGCTATCTTCTCAGACGAGGATCCTCTGCTGCCCCCTGGTGGTCAGGCGTTGAATGAGAGTGCAATCTTTCACGGTTGGGTGGTGCAACAGGTGGCGCAATTTCTGGAGACCCTCAATCGGGACCTCCACCGTGGGGTGGGAAGCCGTTTGGACTCTCTGCTCGGTCAGTGCATGTACTTCGGCCTCTCCTTTAGTCGGGTTGGTGCTGATTTCCGTGGCCAACTCGCTCCTATATTTCAGCAGGTTGCCATGGATACTTTCCGGAAGGCTATTCAGGAAGCGGTGGACAAGTTCCAGGAGGACATGAACTTGTATACGCTGATTTCCCTCCCGTCAATTCTTGGAAGCACCATCCCGCCGGCCATCCCGAGCACCCAGCCGGGCACATTGCAGCCCCCCATGGCCCTGCTGGACTTCCCTCCGCTGGCCTGCTTCCTTAATAATGTCCTGACGGCCTTTAATGACTTGAGACTGTGCTGTCCTATTGGACTTGCGCAGGAAGTCAGCAGATGCATCGAGGAAGCCCTTATTAAGGTGACCAAGCTGATCCTGGTTTTCCATCGAGCTGAAGAATCCGCCTTCAGCAGCCGTGAACGGGAGCTGTTTGTTCAGTTCTGCAGTGCATTTGCCGAGGACATGGTGCCTTTCTTAAACCGATGTTTACAAGTTCTCTTCCCTCCGGCCCAGCTCGCTCTCATACTAGGTGTCCCTCCAACCCAAGTTTCAAAGTACGGCAGTCTGGGCTGCATCAATATGAACACCGTTCTGGAGCCACTGCAGTTTGTTCTGCCCCAAAAAGAGCCTGTGACTCCTGTCCTGGATCTCTGCACAGATCTGAACAGCTTGATGACATCTGAATCAGATCCCACGACTGCAGACAAACATGTTACACCGCATGAAGAAAAGCCCTTTGTTTCTGAGCCGGAGGAGCCTGTATCTGTGACTGATCCTCAAAAAGATGATGTTTCTGCTGAAGCGGTTCATACAGagcaaaacaacacaaacacagagccGGAAATAACTCTTGATGCACAGAACTTAACAGACGAGTTGCCTGATGTTGAAGAGATGTTGTCAAATTAAGTCAACAACTTTGTTTTGTgaagattattattaaattaaccaAATAACCATGTGAAGACACTTATAAAAGGGTTTGGGgtgcttttttttaatgaagactTTATTTGGGAAAGGAAAAATGAATCTAATAACCATGTTCAGACAATTAAAAAAGGTTTAGGATGCATTTTTATTGAAGACTTTATTTGGGGAAGGAAAAATGGTATGTAGCAAATCTGGGGccataaaataaaccatttttttccaagtattgagcaaaaacaaatgaataaatgcaaagtGAATGtaaattttt

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050320-74 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIh. Orthologous to human COG8 (component of oligomeric golgi complex 8).

Ensembl:

ensembl_id ENSDART00000013150

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027038 lncRNA upstream 11003 5837098 ~ 5839834 (+) True XLOC_012563
TCONS_00027037 lncRNA upstream 173471 5672914 ~ 5677366 (+) False XLOC_012561
TCONS_00027036 lncRNA upstream 173471 5672914 ~ 5677366 (+) True XLOC_012561
TCONS_00027033 lncRNA upstream 183221 5658327 ~ 5667616 (+) False XLOC_012560
TCONS_00027039 lncRNA downstream 890570 6750054 ~ 6757446 (+) False XLOC_012578
TCONS_00027040 lncRNA downstream 890903 6750387 ~ 6757446 (+) True XLOC_012578
TCONS_00027041 lncRNA downstream 921006 6780490 ~ 6785702 (+) True XLOC_012579
TCONS_00027042 lncRNA downstream 1074540 6934024 ~ 6936237 (+) True XLOC_012581
TCONS_00025180 lncRNA downstream 1140710 7000194 ~ 7012242 (+) False XLOC_012583
TCONS_00025148 mRNA upstream 20423 5813996 ~ 5830414 (+) True XLOC_012562
TCONS_00025147 mRNA upstream 209107 5618368 ~ 5641730 (+) True XLOC_012559
TCONS_00025144 mRNA upstream 293777 5543719 ~ 5557060 (+) False XLOC_012557
TCONS_00025145 mRNA upstream 298628 5547185 ~ 5552209 (+) False XLOC_012557
TCONS_00025146 mRNA upstream 300590 5549672 ~ 5550247 (+) True XLOC_012557
TCONS_00025151 mRNA downstream 15784 5875268 ~ 5912156 (+) False XLOC_012565
TCONS_00025150 mRNA downstream 15784 5875268 ~ 5912156 (+) True XLOC_012565
TCONS_00025152 mRNA downstream 58141 5917625 ~ 5969245 (+) True XLOC_012566
TCONS_00025153 mRNA downstream 179657 6039141 ~ 6082443 (+) False XLOC_012567
TCONS_00025154 mRNA downstream 195332 6054816 ~ 6083792 (+) True XLOC_012567
TCONS_00025142 other upstream 311263 5531522 ~ 5539574 (+) True XLOC_012556
TCONS_00025141 other upstream 311382 5528981 ~ 5539455 (+) False XLOC_012556
TCONS_00025134 other upstream 572846 5277875 ~ 5277991 (+) True XLOC_012549
TCONS_00025129 other upstream 847453 5003269 ~ 5003384 (+) True XLOC_012542
TCONS_00025128 other upstream 1078779 4771136 ~ 4772058 (+) True XLOC_012541
TCONS_00025158 other downstream 441124 6300608 ~ 6305665 (+) False XLOC_012570
TCONS_00025159 other downstream 441132 6300616 ~ 6305606 (+) False XLOC_012570
TCONS_00025160 other downstream 441562 6301046 ~ 6303556 (+) True XLOC_012570
TCONS_00025162 other downstream 537287 6396771 ~ 6400268 (+) True XLOC_012571
TCONS_00025165 other downstream 665292 6524776 ~ 6524890 (+) True XLOC_012573

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_12266959_12272152.mRNA True 2278 mRNA 0.49 5 CI01000013 12266607 ~ 12272152 (-)