RNA id: TCONS_00025228


Basic Information

Item Value
RNA id TCONS_00025228
length 4042
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_012609
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 8339596 ~ 8367566 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCACTGAACATGGCTAATATAAAGCATGTTATTGCTCtggttttaatgtatttttgcacATGGATAAAGAGAAGTTTAGAACAGATACAGAGGTGTCTTTACTCCAGAAGCAGTTTAAACTGGGTTCACTTTGGACAAGCAGAATCTGATGTTGTGGAGGAGAGGTCTGATATCCTGCAGTCAGAAATCTGGAGAACAAATGAAGACTACAGGACCTATCGGCACCAGAACGATGGACCAATGGTGATGGTGCAAACCAGCACACATGTTTTCCATGTGGATCTAGAGAAGCTTGCAGATTCCAGCGAGTACTTCAAGGCTCTCTTTCACTCCTCCATGAGAGAGACATCTGAACGACTGGTACACCTTGAACATGTTCCCGCTCCAGTCTTCCACAACTTTCTACAGTTCTGCTTCCTTCAGAGGTTTTGTGTTCCTGACACCCTCCTTGGAGAACACCTACGGGTGAGCACCTACTTTCTGGCTTCTGGGTTCACTTATCGTCTTCTTACTGCTCTCTCTCAAGCACTAACAGAGCAGACTTGCTTGGGCTATATCGAGCTGGCTGATGAACTCTGCAGTGAGGAGATCCTAGAAACTGTGCTAACCTACCTGAGCAGGTATCTACTGGAGCGTCCACACCTGAGTGAGGGCTTGGATCCACACCTTAAAGCAGAGGTTCTGAGATTAAGGTCAATAGGAACTCCGCACTTGTGCTGCTTGAGGAAGGAGAACTTGACCTCAGGGAATGACCTGGAAACAGAGACTGCTAGAACAATCTTCTGGCTGAAGGAAGATAGGGATGATGGGAAATGGAGTTCTCTTACAGATCTACCCTTTTGTGCAGATAAGTGGTGCTTCACTACAGCAGTTCTCTATAATTACCTCTATCTAATAGGGGGTTATAGACAGCGTGTAAAGAAGGGATATGAGTTCAAGATGGCTTCTTTTCGCTACAACCCTTTTACCAATCGATGGGTATCAACAGCTCCTTTGATTAAGCACAGGCGTCACTTCAGCGCAGCAGTGTGTGAGGGGAAAATCTTTGCTGTGGGCGGCTGGTATCTGGATTCCCTTGTGACTCCTGACTCCAGCACTGGTGTATACACTGCTGTGGAGAGGTACGATCCATGGACAGATACCTGGGCATTCGTTTCCTCCCTTCCTCTGACAGACTTTCAGTTCAGCCTGTCCCTTTCTCATGACTCCCCACTCACAACCAGCCTAGGACACTGTCTTtatgtactgggaaacatccaaagaACTGGAGAGAAGTTGGTGCTTCGCTACGATACTAGACAAGATAGCTGGTGTGAACTGCTCCCCACACTAACTCGCTCTACTGCAAATGTCCCCATCTTGCATTTCTTGGGTGCTTCCAATAATCAGCTGGTTGTAATTGGTGGGAACAATTCTGAAACCATGCTGACCTCTTTCTGTGTGGACTCTCAGAAGTGGGGCCAAATAAAAGCAATGGAGAAGACCACTTTACTCGGCCAGGGCACCATTCTGAACAACAAGCTCTACATGTCAGGGATAAAAGACAATTCTGTAGTCAAACTGAATCTGCATTCTTTGTCTCTCGGTCTTCTTCCTCCACTTCCCATTTCTACCTGTTATGAGAGCATTTTTCACCTCTACTTCTAATGTTTAAATACAAAGAATTTCCCATCCATTTACAAAACCTGCCTAAAGCAAGGATGTCCAATCCTGCTCTAAGGAACAAAGTTCTGCTTAGTTTAGCTTTCAttaagtaggacatgttcctgtaTAAACTTCCATGTTGATCCTTTAACAACatgccaatcagaattaagggatacgtttacagtttatgttattttttgggcttacggttaggtttatgcacttctacatgactgttatccaactattattcctctCTGACTTTGGGAGTAATTTAcagttttggttgggtttaggagtagggAATAGGGATGAATtacattttcaagagttcacccttagctgatgatgGATAATAAAAAGCATGTTTGGCGTGCTGCCCCGggtgagagccctgagctcaaaagatccttgagcccggggctccctcccatttgaagggtgaaaggggagtttgagcttgggtggatctcgagaactcccctgttgTAAGTGACAAATTATGGATTACTGTGGAAATAAACTGCTGCCTAGAGCTCGTCTAaagtgccaatttggtttattcaattcacctataatcgcatgtctttggactgtgggaggaaaccgggaaaccctggggaaacccacatgagcacgatgagaacatgtaaactccgcacagaaacgttagCTGGTCTGGtaaggactcgaaccagtgacgttcttgctgtgaggcaactgtgctaaccactgggctgccatGCCACCCTGTCTAGAAGGGAAGGAggaataggggtggaaggggtaggattctttaaaacgaagatACAGAGCTAAGAAATTCTGGTTATTTATGGTGAGTTTGGAATtgactgattggtggatcatgtaTTAGCTCATGCTGAACCAGCCATGTTCAATTATAAGTCTGcactcctcttgaaattagtttgtaaataaGCAACTCtttgaacaaaaatgatgttccaggatcaacatagatgctgcggtcacactaaagtttgtgtgtgcaaaattctgtcgtacggcgctgtgaaaaggggtggttttaaacaagattattagacattaaaaaaagcgagcgattgctcaatgttttaaatttctgtccagagaggtcatgttttgatcttcgattggtctcacacagtcaagtgacgtgatttcgcaggtcagagttcaccaagcttaaactttgcaccgcATCGAACAGCGAAATGTAACGCATGACCCCATGTTTCTGGTCTGATGCATTCGTGTGtgtataaatggaagtcaatagggagAAAattcaagtgtgaccgcagcttaaacctaaaactttttttttaattatttaacataattATCTAGCCTAACTTCATTCCCtttcttcgttttggaagaaccTCCCCATCCATCCCTTTTCTTTAATTCTAAGATCGGGCGACATTGCAGCTCAGTGGCAAGCACtgctgccttacagcaagaatgttcagcaagaaggttgctagatCAAGTActagctgagccagttggcactttctatgcaaagtttacatgttctccctatgttcacgtgggttttccctgggtacTCTGGTTCCCTCCCACCGTCTAAAGACATATAACACAAgtgaattaaataatagtaaaaatcacaaaaaagttTGGCAGCCTATTTCCATATAGTCGTCTTACTAATCAAGGTATAGGTTAAACGAatcaggggagctctcgagaactttctgatctcgtatccctcctaacgctcattgaccaggcgggagccttgggcttatctatctccgagctcagtgTTCTCTCCCAAGACAGCTTGCCAAACCTGcatctaagtgtaaactcttgaaatttaGTAAAGGTAGTGAAGGAGACTTTGATACTCTTCAAGCGTTTATTTAGTGTTGGAGTCAAACTTTTGAAAGATCActtatttaaaagcaaaacatgTTCAGAATACATGTTGCTGCCGCATAAACTTTATTTGGTATAATTACAGTTAAAGAAGAAAGAGTGTATAATTATTTTGTTGTGCTCGCTGAATATGACCTTTGTTATAATACTCAGGATTAAAGGTGTTCAACAACATTTTGCAGAAActattgtcatttttgtttgaatataGGCCAAAACTGCTTATGTTATGGCTATGTATAACTTCTCGAATCCTCaagcaagtaaaagtaaaatcagAGAGGGGATACTGAGATTTCTACTGAGGGGGCTTGCATTAGTAAGTCAACAACTAGCAAGTTTtctaacaaaacacaaaaacaacctaATTATAATGATAGCCAAGCCAAATGCAAAAATACAATTACCCAACAAGTTCCTTGTTATTCAGTATTTAAAAGCATGCTTTTTAGATGTCTGACCTTTTACATAACAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185397

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025224 lncRNA upstream 1439 8334388 ~ 8338157 (+) False XLOC_012608
TCONS_00025226 lncRNA upstream 1439 8335139 ~ 8338157 (+) True XLOC_012608
TCONS_00025225 lncRNA upstream 4217 8334502 ~ 8335379 (+) False XLOC_012608
TCONS_00025221 lncRNA upstream 236400 8100905 ~ 8103196 (+) True XLOC_012606
TCONS_00027055 lncRNA upstream 675939 7651750 ~ 7663657 (+) False XLOC_012602
TCONS_00025265 lncRNA downstream 1634190 9980878 ~ 9983912 (+) True XLOC_012626
TCONS_00026870 lncRNA downstream 1738953 10085641 ~ 10089253 (+) True XLOC_012629
TCONS_00027057 lncRNA downstream 1756253 10102941 ~ 10190202 (+) False XLOC_012630
TCONS_00027058 lncRNA downstream 1759587 10106275 ~ 10151626 (+) False XLOC_012630
TCONS_00025269 lncRNA downstream 1759587 10106275 ~ 10157525 (+) False XLOC_012630
TCONS_00025223 mRNA upstream 650 8320165 ~ 8338946 (+) False XLOC_012608
TCONS_00025222 mRNA upstream 96058 8231138 ~ 8243538 (+) True XLOC_012607
TCONS_00025216 mRNA upstream 690876 7639401 ~ 7648720 (+) False XLOC_012601
TCONS_00025215 mRNA upstream 716704 7612438 ~ 7622892 (+) True XLOC_012600
TCONS_00025214 mRNA upstream 720546 7611298 ~ 7619050 (+) False XLOC_012600
TCONS_00025230 mRNA downstream 232 8346920 ~ 8367566 (+) True XLOC_012609
TCONS_00025232 mRNA downstream 55441 8402129 ~ 8408518 (+) False XLOC_012611
TCONS_00025233 mRNA downstream 55555 8402243 ~ 8408131 (+) True XLOC_012611
TCONS_00025234 mRNA downstream 458887 8805575 ~ 8825266 (+) False XLOC_012612
TCONS_00025235 mRNA downstream 465861 8812549 ~ 8842818 (+) False XLOC_012612
TCONS_00025220 other upstream 340899 7998576 ~ 7998697 (+) True XLOC_012605
TCONS_00025219 other upstream 456703 7882779 ~ 7882893 (+) True XLOC_012604
TCONS_00025218 other upstream 464848 7874631 ~ 7874748 (+) True XLOC_012603
TCONS_00025209 other upstream 752306 7584386 ~ 7587290 (+) False XLOC_012597
TCONS_00025231 other downstream 50521 8397209 ~ 8397325 (+) True XLOC_012610
TCONS_00025237 other downstream 543200 8889888 ~ 8891517 (+) False XLOC_012613
TCONS_00025238 other downstream 543200 8889888 ~ 8892797 (+) False XLOC_012613
TCONS_00025239 other downstream 543225 8889913 ~ 8892723 (+) True XLOC_012613
TCONS_00025241 other downstream 555174 8901862 ~ 8909612 (+) False XLOC_012614

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_10838711_10841053.mRNA True 2363 mRNA 0.44 4 CI01000013 10838497 ~ 10841564 (-)