Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025232 |
| length | 1530 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 10 |
| gene id | XLOC_012611 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 8402129 ~ 8408518 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071048 | nuclear retention of unspliced pre-mRNA at the site of transcription | biological_process |
| GO:0000350 | generation of catalytic spliceosome for second transesterification step | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0071021 | U2-type post-spliceosomal complex | cellular_component |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005682 | U5 snRNP | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040704-45 | Predicted to be involved in generation of catalytic spliceosome for second transesterification step and nuclear retention of unspliced pre-mRNA at the site of transcription. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Orthologous to human PRPF18 (pre-mRNA processing factor 18). |
| ensembl_id | ENSDART00000081154 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025224 | lncRNA | upstream | 63972 | 8334388 ~ 8338157 (+) | False | XLOC_012608 |
| TCONS_00025226 | lncRNA | upstream | 63972 | 8335139 ~ 8338157 (+) | True | XLOC_012608 |
| TCONS_00025225 | lncRNA | upstream | 66750 | 8334502 ~ 8335379 (+) | False | XLOC_012608 |
| TCONS_00025221 | lncRNA | upstream | 298933 | 8100905 ~ 8103196 (+) | True | XLOC_012606 |
| TCONS_00027056 | lncRNA | upstream | 738472 | 7651829 ~ 7663657 (+) | True | XLOC_012602 |
| TCONS_00025265 | lncRNA | downstream | 1572360 | 9980878 ~ 9983912 (+) | True | XLOC_012626 |
| TCONS_00026870 | lncRNA | downstream | 1677123 | 10085641 ~ 10089253 (+) | True | XLOC_012629 |
| TCONS_00027057 | lncRNA | downstream | 1694423 | 10102941 ~ 10190202 (+) | False | XLOC_012630 |
| TCONS_00027058 | lncRNA | downstream | 1697757 | 10106275 ~ 10151626 (+) | False | XLOC_012630 |
| TCONS_00025269 | lncRNA | downstream | 1697757 | 10106275 ~ 10157525 (+) | False | XLOC_012630 |
| TCONS_00025230 | mRNA | upstream | 34563 | 8346920 ~ 8367566 (+) | True | XLOC_012609 |
| TCONS_00025229 | mRNA | upstream | 34871 | 8340886 ~ 8367258 (+) | False | XLOC_012609 |
| TCONS_00025228 | mRNA | upstream | 55441 | 8339596 ~ 8346688 (+) | False | XLOC_012609 |
| TCONS_00025227 | mRNA | upstream | 55441 | 8339596 ~ 8346688 (+) | False | XLOC_012609 |
| TCONS_00025223 | mRNA | upstream | 63183 | 8320165 ~ 8338946 (+) | False | XLOC_012608 |
| TCONS_00025234 | mRNA | downstream | 397057 | 8805575 ~ 8825266 (+) | False | XLOC_012612 |
| TCONS_00025235 | mRNA | downstream | 404031 | 8812549 ~ 8842818 (+) | False | XLOC_012612 |
| TCONS_00025236 | mRNA | downstream | 424733 | 8833251 ~ 8842189 (+) | True | XLOC_012612 |
| TCONS_00025240 | mRNA | downstream | 493328 | 8901846 ~ 8909471 (+) | False | XLOC_012614 |
| TCONS_00025242 | mRNA | downstream | 493374 | 8901892 ~ 8909935 (+) | True | XLOC_012614 |
| TCONS_00025231 | other | upstream | 4804 | 8397209 ~ 8397325 (+) | True | XLOC_012610 |
| TCONS_00025220 | other | upstream | 403432 | 7998576 ~ 7998697 (+) | True | XLOC_012605 |
| TCONS_00025219 | other | upstream | 519236 | 7882779 ~ 7882893 (+) | True | XLOC_012604 |
| TCONS_00025218 | other | upstream | 527381 | 7874631 ~ 7874748 (+) | True | XLOC_012603 |
| TCONS_00025209 | other | upstream | 814839 | 7584386 ~ 7587290 (+) | False | XLOC_012597 |
| TCONS_00025237 | other | downstream | 481370 | 8889888 ~ 8891517 (+) | False | XLOC_012613 |
| TCONS_00025238 | other | downstream | 481370 | 8889888 ~ 8892797 (+) | False | XLOC_012613 |
| TCONS_00025239 | other | downstream | 481395 | 8889913 ~ 8892723 (+) | True | XLOC_012613 |
| TCONS_00025241 | other | downstream | 493344 | 8901862 ~ 8909612 (+) | False | XLOC_012614 |
| TCONS_00025249 | other | downstream | 703298 | 9111816 ~ 9111932 (+) | True | XLOC_012617 |
