RNA id: TCONS_00025229


Basic Information

Item Value
RNA id TCONS_00025229
length 3060
RNA type mRNA
GC content 0.48
exon number 19
gene id XLOC_012609
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 8339596 ~ 8367566 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGATCTAGAGAAGCTTGCAGATTCCAGCGAGTACTTCAAGGCTCTCTTTCACTCCTCCATGAGAGAGACATCTGAACGACTGGTACACCTTGAACATGTTCCCGCTCCAGTCTTCCACAACTTTCTACAGTTCTGCTTCCTTCAGAGGTTTTGTGTTCCTGACACCCTCCTTGGAGAACACCTACGGGTGAGCACCTACTTTCTGGCTTCTGGGTTCACTTATCGTCTTCTTACTGCTCTCTCTCAAGCACTAACAGAGCAGACTTGCTTGGGCTATATCGAGCTGGCTGATGAACTCTGCAGTGAGGAGATCCTAGAAACTGTGCTAACCTACCTGAGCAGGTATCTACTGGAGCGTCCACACCTGAGTGAGGGCTTGGATCCACACCTTAAAGCAGAGGTTCTGAGATTAAGGTCAATAGGAACTCCGCACTTGTGCTGCTTGAGGAAGGAGAACTTGACCTCAGGGAATGACCTGGAAACAGAGACTGCTAGAACAATCTTCTGGCTGAAGGAAGATAGGGATGATGGGAAATGGAGTTCTCTTACAGATCTACCCTTTTGTGCAGATAAGTGGTGCTTCACTACAGCAGTTCTCTATAATTACCTCTATCTAATAGGGGGTTATAGACAGCGTGTAAAGAAGGGATATGAGTTCAAGATGGCTTCTTTTCGCTACAACCCTTTTACCAATCGATGGGTATCAACAGCTCCTTTGATTAAGGCTGTGCTTTAAGCCTGTATAATGGCAGAAGCTCATCAGGCGGTGGCATTTCAGTTCACCGTCACTCCTGATGGCATCGACCTACAGTTGAGTCGAGAAGTTCTCAAACACATCTACATATCTGGAGTGACATCATGGAAGAAACGGGCCATCCGCTTTAAGAACAGTGTTCTGACCGGTGTTTACCCTGCCAGTCCTTCAAGCTGGTTATTTGTAGTTATTGCTATAATGAGCACCATGTATGCCAGGATCGACCCCTCCATGGGCACGATTGATAAAATCAAGACATCTCTACCAGTGAGTGAGTTTATGACCGTTCAGACTCAGACGGTGTTGAGTGCCATCCTGTTTGCCACAGGTCTCTGGTTATCTGTCATATTCCTGCTGCGATACCTCCTCAAAGCTCTCCTGTCCTATCACGCCTGGATCTTTGAGTCTCATGGCAAAATGAGTTACTCTACTAAAGTCTGGCTGaGCCTTGTAAAGCTGCTGTCTGGTCGCCGGCCTCTGCTCTACAGCTTTCAGGGATCTCTGCCACATCTGCCTGTACCATCTATTGATGACACGATCAGAAGGTATCTAGAATCAGTTCGACCTCTTCTGGATGATGAGCAGTATAAACAGATGGAGACTGTTGCTAATGACTTCAAAAAGGATCCTGCCCCCAAATTACAGAAACACCTAAAACTCAAATCCTGGTGGGCCACCAATTATGTGAGTGACTGGTGGGAGGAGTATATCTACCTCAGAGGACGAGACCCCATCATGGTCAACAGCAACTTCTACACTATGGATTTGCTGTATGTAATCCCCACATATCGGCAGGCTGCACGCGCTGGAAATGTAGTTCATGCTATGCTGCAGTATCGCCGTAAGCTGGAGCGAGGAGAGCTTACCCCGCTGAGAGCTCTTGGGATTGTCCCCATGTGCTCTTTTCAGTATGAGAGGATGTTCAACACCACACGTATCCCTGGCATTGAGACTGACTTCGTGCAGCATCTGAAGGACAGAAAGCACTTGGTTGTGTACCATCGTGGCCGTTTGTTTAAGGTCTGGTTGTACTACGGTGGCCGCCACCTTTGGCCCTCAGAGCTGGAGCTCCAGTTTCAACGAATCCTAGATGACAAGTCTGAACCTCAACCTGGAGAGCTCAAGCTGCCTTCACTGACTGCTGGAAACAGAGTTCCTTGGGCCAGGGCTCGTTTGAAGTATTTTGGTGAGGGTGTCAACCGGGCATCTCTGGAGGCCATTGAAACAGCTGCGTTTTTTCTGACCCTGGATGATGAAGCACATGGATACGATCCGGAGAACATACGGTCCTTGGACCTCTACGCCAAATCTCTACTGCATGGAAAGTGCTATGATAGGTGGTTTGATAAATCCTTCAATTTGATTGTGTACAAGAACGGTAAAATGGGTGTCAACACTGAGCATTCATGGGCTGACTCTCCTATCATTGGACACATGTGGGAGTATGTTTTGGCCACAGATTGTTTCCATCTGGGATACACAGCAGAGGGACATTGCAAAGGAGATGTCAACAAAACCCTGGCACCCCCTACCAGATTACAGTGGGACATCCCAAAAGCGTGCCAGGAGATTATCGAAGGCTCCTATAGGATTGCAAAGGGAATCGCTGATGATGTGGATTTCCACGGCTGCTTGTTTAATGAGTTTGGAAAGGGCCTGATAAAGAAATGCAGAACAAGTCCGGATGCTTTTATCCAGCTGGCACTGCAACTAGCTCAATATAGGGACAAGGGGGAGTTTTGTCTGACTTACGAATCCTCCATGACCCGAATGTTCCGCGAGGGCAGGACGGAAACTGTGAGATCGTGCACTTGCGAGTCAACAGCATTTGTAAGAGCAATGGAGGATGACACAACCACGAATGAGCAGAGGTTAGCGCTCTTCAAACAAGCAGCAGAGAAGCATCAGAACATGTACCGTCTGGCCATGACAGGAGCTGGGATCGACCGCCATCTCTTCTGCCTCTACATTGTGTCCAAAGTCATGGGCATAGACTCTCCCTTCCTCAAACAGGTTTTGTCAGAGCCCTGGCGTCTCTCCACCAGTCAAACTCCCCAACAGCAGCTCAATCTCATTGACACTCAGAAGTTTCCTAAATATGTGTCAGCTGGAGGAGGCTTTGGGCCTGTTGCAGATGACGGTTATGGTGTTTCTTACATCATTGTCGGCGAGAATCTCATTACATTCCACATTTCCAGCAAGTTCTCCAGTCCTGAGACGGATTCTTTCCGCTTTGGGCAGAACATCAGACAGGCCATGCAGGACATAAGAGCTCTATTCAACCAAAAAGAGAAGAAGATGTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-9 Predicted to enable carnitine O-palmitoyltransferase activity. Acts upstream of or within response to (R)-carnitine and response to bacterium. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Orthologous to human CPT1B (carnitine palmitoyltransferase 1B).

Ensembl:

ensembl_id ENSDART00000081132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025224 lncRNA upstream 2729 8334388 ~ 8338157 (+) False XLOC_012608
TCONS_00025226 lncRNA upstream 2729 8335139 ~ 8338157 (+) True XLOC_012608
TCONS_00025225 lncRNA upstream 5507 8334502 ~ 8335379 (+) False XLOC_012608
TCONS_00025221 lncRNA upstream 237690 8100905 ~ 8103196 (+) True XLOC_012606
TCONS_00027056 lncRNA upstream 677229 7651829 ~ 7663657 (+) True XLOC_012602
TCONS_00025265 lncRNA downstream 1613620 9980878 ~ 9983912 (+) True XLOC_012626
TCONS_00026870 lncRNA downstream 1718383 10085641 ~ 10089253 (+) True XLOC_012629
TCONS_00027057 lncRNA downstream 1735683 10102941 ~ 10190202 (+) False XLOC_012630
TCONS_00027058 lncRNA downstream 1739017 10106275 ~ 10151626 (+) False XLOC_012630
TCONS_00025269 lncRNA downstream 1739017 10106275 ~ 10157525 (+) False XLOC_012630
TCONS_00025223 mRNA upstream 1940 8320165 ~ 8338946 (+) False XLOC_012608
TCONS_00025222 mRNA upstream 97348 8231138 ~ 8243538 (+) True XLOC_012607
TCONS_00025216 mRNA upstream 692166 7639401 ~ 7648720 (+) False XLOC_012601
TCONS_00025215 mRNA upstream 717994 7612438 ~ 7622892 (+) True XLOC_012600
TCONS_00025214 mRNA upstream 721836 7611298 ~ 7619050 (+) False XLOC_012600
TCONS_00025232 mRNA downstream 34871 8402129 ~ 8408518 (+) False XLOC_012611
TCONS_00025233 mRNA downstream 34985 8402243 ~ 8408131 (+) True XLOC_012611
TCONS_00025234 mRNA downstream 438317 8805575 ~ 8825266 (+) False XLOC_012612
TCONS_00025235 mRNA downstream 445291 8812549 ~ 8842818 (+) False XLOC_012612
TCONS_00025236 mRNA downstream 465993 8833251 ~ 8842189 (+) True XLOC_012612
TCONS_00025220 other upstream 342189 7998576 ~ 7998697 (+) True XLOC_012605
TCONS_00025219 other upstream 457993 7882779 ~ 7882893 (+) True XLOC_012604
TCONS_00025218 other upstream 466138 7874631 ~ 7874748 (+) True XLOC_012603
TCONS_00025209 other upstream 753596 7584386 ~ 7587290 (+) False XLOC_012597
TCONS_00025231 other downstream 29951 8397209 ~ 8397325 (+) True XLOC_012610
TCONS_00025237 other downstream 522630 8889888 ~ 8891517 (+) False XLOC_012613
TCONS_00025238 other downstream 522630 8889888 ~ 8892797 (+) False XLOC_012613
TCONS_00025239 other downstream 522655 8889913 ~ 8892723 (+) True XLOC_012613
TCONS_00025241 other downstream 534604 8901862 ~ 8909612 (+) False XLOC_012614

Expression Profile

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