Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025517 |
| length | 702 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_012789 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 21408794 ~ 21620816 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042984 | regulation of amyloid precursor protein biosynthetic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050706-167 | Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; cranial ganglion; and neurons. Orthologous to human NECAB2 (N-terminal EF-hand calcium binding protein 2). |
| ensembl_id | ENSDART00000144523 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025515 | lncRNA | upstream | 14426 | 21393366 ~ 21394377 (+) | True | XLOC_012788 |
| TCONS_00027107 | lncRNA | upstream | 239055 | 21163424 ~ 21169748 (+) | False | XLOC_012786 |
| TCONS_00027108 | lncRNA | upstream | 239055 | 21165181 ~ 21169748 (+) | True | XLOC_012786 |
| TCONS_00026897 | lncRNA | upstream | 239724 | 21164826 ~ 21169079 (+) | False | XLOC_012786 |
| TCONS_00025498 | lncRNA | upstream | 836469 | 20566846 ~ 20572334 (+) | False | XLOC_012777 |
| TCONS_00025519 | lncRNA | downstream | 585509 | 22078144 ~ 22081753 (+) | True | XLOC_012792 |
| TCONS_00026898 | lncRNA | downstream | 606984 | 22099619 ~ 22100228 (+) | True | XLOC_012793 |
| TCONS_00027111 | lncRNA | downstream | 1563165 | 23055800 ~ 23071312 (+) | True | XLOC_012802 |
| TCONS_00027112 | lncRNA | downstream | 1966294 | 23458929 ~ 23463541 (+) | True | XLOC_012805 |
| TCONS_00027113 | lncRNA | downstream | 2318749 | 23811384 ~ 23828058 (+) | True | XLOC_012807 |
| TCONS_00025514 | mRNA | upstream | 7402 | 21273749 ~ 21401401 (+) | False | XLOC_012788 |
| TCONS_00025511 | mRNA | upstream | 263429 | 21122818 ~ 21145374 (+) | False | XLOC_012785 |
| TCONS_00025512 | mRNA | upstream | 265363 | 21122960 ~ 21143440 (+) | True | XLOC_012785 |
| TCONS_00025510 | mRNA | upstream | 288585 | 21113216 ~ 21120218 (+) | True | XLOC_012784 |
| TCONS_00025509 | mRNA | upstream | 332797 | 21071023 ~ 21076006 (+) | True | XLOC_012783 |
| TCONS_00025518 | mRNA | downstream | 458916 | 21951551 ~ 22020509 (+) | True | XLOC_012791 |
| TCONS_00025520 | mRNA | downstream | 616744 | 22109379 ~ 22116378 (+) | True | XLOC_012794 |
| TCONS_00025521 | mRNA | downstream | 630437 | 22123072 ~ 22127985 (+) | True | XLOC_012795 |
| TCONS_00025522 | mRNA | downstream | 646289 | 22138924 ~ 22282675 (+) | False | XLOC_012796 |
| TCONS_00025523 | mRNA | downstream | 681995 | 22174630 ~ 22283398 (+) | False | XLOC_012796 |
| TCONS_00025513 | other | upstream | 217019 | 21191665 ~ 21191784 (+) | True | XLOC_012787 |
| TCONS_00025507 | other | upstream | 385202 | 21021699 ~ 21023601 (+) | True | XLOC_012781 |
| TCONS_00025461 | other | upstream | 2284724 | 19123332 ~ 19124079 (+) | True | XLOC_012754 |
| TCONS_00025449 | other | upstream | 2580318 | 18827249 ~ 18828485 (+) | True | XLOC_012745 |
| TCONS_00025448 | other | upstream | 2608751 | 18799118 ~ 18800052 (+) | True | XLOC_012744 |
| TCONS_00025547 | other | downstream | 1694784 | 23187419 ~ 23249572 (+) | False | XLOC_012803 |
| TCONS_00025560 | other | downstream | 1979511 | 23472146 ~ 23472260 (+) | True | XLOC_012806 |
| TCONS_00025562 | other | downstream | 2984891 | 24477526 ~ 24483172 (+) | False | XLOC_012809 |
| TCONS_00025565 | other | downstream | 3150352 | 24642987 ~ 24643102 (+) | True | XLOC_012811 |
| TCONS_00025566 | other | downstream | 3244599 | 24737234 ~ 24739896 (+) | False | XLOC_012812 |
