Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025542 |
| length | 636 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 7 |
| gene id | XLOC_012802 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 22994113 ~ 23072665 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0048769 | sarcomerogenesis | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0097535 | lymphoid lineage cell migration into thymus | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0016513 | core-binding factor complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030018 | Z disc | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003712 | transcription coregulator activity | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-440 | Enables protein heterodimerization activity. Contributes to DNA binding activity and transcription coregulator activity. Acts upstream of or within several processes, including heart contraction; lymphoid lineage cell migration into thymus; and myofibril assembly. Located in Z disc and nucleus. Part of core-binding activity factor complex. Is expressed in several structures, including digestive system; ganglia; hematopoietic system; immune system; and pericardial region. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human CBFB (core-binding factor subunit beta). |
| ensembl_id | ENSDART00000172923 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026898 | lncRNA | upstream | 894199 | 22099619 ~ 22100228 (+) | True | XLOC_012793 |
| TCONS_00025519 | lncRNA | upstream | 912674 | 22078144 ~ 22081753 (+) | True | XLOC_012792 |
| TCONS_00025517 | lncRNA | upstream | 1501792 | 21408803 ~ 21492635 (+) | True | XLOC_012789 |
| TCONS_00027112 | lncRNA | downstream | 389434 | 23458929 ~ 23463541 (+) | True | XLOC_012805 |
| TCONS_00027113 | lncRNA | downstream | 741889 | 23811384 ~ 23828058 (+) | True | XLOC_012807 |
| TCONS_00027114 | lncRNA | downstream | 806945 | 23876440 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00027115 | lncRNA | downstream | 807622 | 23877117 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00026900 | lncRNA | downstream | 807622 | 23877117 ~ 23889042 (+) | False | XLOC_012808 |
| TCONS_00025538 | mRNA | upstream | 18772 | 22793465 ~ 22975655 (+) | False | XLOC_012801 |
| TCONS_00025539 | mRNA | upstream | 33896 | 22793743 ~ 22960531 (+) | True | XLOC_012801 |
| TCONS_00025537 | mRNA | upstream | 306354 | 22606259 ~ 22688073 (+) | True | XLOC_012800 |
| TCONS_00025535 | mRNA | upstream | 308720 | 22504200 ~ 22685707 (+) | False | XLOC_012800 |
| TCONS_00025550 | mRNA | downstream | 124072 | 23193567 ~ 23355808 (+) | False | XLOC_012803 |
| TCONS_00025549 | mRNA | downstream | 124072 | 23193567 ~ 23355808 (+) | False | XLOC_012803 |
| TCONS_00025548 | mRNA | downstream | 124072 | 23193567 ~ 23355808 (+) | False | XLOC_012803 |
| TCONS_00025551 | mRNA | downstream | 124325 | 23193820 ~ 23356077 (+) | False | XLOC_012803 |
| TCONS_00025552 | mRNA | downstream | 149485 | 23218980 ~ 23355808 (+) | False | XLOC_012803 |
| TCONS_00025513 | other | upstream | 1802643 | 21191665 ~ 21191784 (+) | True | XLOC_012787 |
| TCONS_00025507 | other | upstream | 1970826 | 21021699 ~ 21023601 (+) | True | XLOC_012781 |
| TCONS_00025461 | other | upstream | 3870348 | 19123332 ~ 19124079 (+) | True | XLOC_012754 |
| TCONS_00025449 | other | upstream | 4165942 | 18827249 ~ 18828485 (+) | True | XLOC_012745 |
| TCONS_00025448 | other | upstream | 4194375 | 18799118 ~ 18800052 (+) | True | XLOC_012744 |
| TCONS_00025547 | other | downstream | 117924 | 23187419 ~ 23249572 (+) | False | XLOC_012803 |
| TCONS_00025560 | other | downstream | 402651 | 23472146 ~ 23472260 (+) | True | XLOC_012806 |
| TCONS_00025562 | other | downstream | 1408031 | 24477526 ~ 24483172 (+) | False | XLOC_012809 |
| TCONS_00025565 | other | downstream | 1573492 | 24642987 ~ 24643102 (+) | True | XLOC_012811 |
| TCONS_00025566 | other | downstream | 1667739 | 24737234 ~ 24739896 (+) | False | XLOC_012812 |
