RNA id: XM_036980413.1


Basic Information

Item Value
RNA id XM_036980413.1
length 4296
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110525336
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54113139 ~ 54223986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCCTCGACTCAAAATGTATAACTAACCTTATactattaattaattaatcaatctgGGATACAACGGCTACAATTGTCACCTTTTAGAAATAGTTTTCCTACCCCTTTCTTCTCGCTCCTCATGAGCGCATGGATAACTGTTGTGCTCAGGCTGTGGTGAATGAGATTGAAGAAGAGTTCTTGTTTTGTATCTCAGTTTCTCTCTTTTTGCACAAATTGAATTTAAACAAATACTACGGAGATCTCAGACTAATCAATGGAGGATATTTGAATATTCACATCAATTGTATCGGTATAGAGTATTGGGTTGTTTGTAAATATTTAATTAATATCTGTGGAGAGGACTGCTGCTGTTCATGTGAGTGAAGGGCTGAACGTTCCCCCGGACTGACTGGCACACTGACTGACTCAATGATGGAATTACAAACATTACAGGAGGCCTTGAAAGTGGAAATACAAGTCCATCAGGAATGATGGTGGAcgtcttgaagcaagtggggaccaTCTACTGGGATAAAACTGGTCACCCAGATGAAACAGGACCCACAGAATGCTGATCTGAAGAAGCAGCTCCACGAACTTCAGGCTAAGATCACAGCGCTTAGCGAGAAGCAGAAAAGCGTTGTGGAGCAGCTGAGGAAGGACCTGCTGGTGAAACAGGAGCCAGAGGTGACGGTGCAGGTGCCGGCTGCAGACAAACACGTCCTCCAGATCCCCTCCTCTGCCACTCTGCTCGCCCTACAGCAGACCACACacacccaggccctgcagcagaAGATGCTGGCAGTCACCCCAGTCATCACCACTAAGACTCTACCTCTAGTGCTGAAAGCTGCCACTCCCACCATGCCTGCCTCTGTCATGGTGCAGCCCCCCTCCACGGTCACTGCCATCAGCCACACCTCCAAGCCCGGTGCCATCATCTCTGACAACTCCAACTTCCGAAACACACCAGTCAACCTCCAGGTGGCCGGCAAGTTGACCAATCAGGGTTCAGAGTCCGTGCGTCTGGTGTCAAAGAATTCAGTTGTGGTCCGGGCGAAGCCCAACAGTGTGCCCATTGCCCCAGCGCCCCTTCGGCCCATGATGACTGCACTCCAGCTGCTCCAGCGGGGCCCGGTGATGCTGACCAACAAGCTGAGCCCCTCCTCGCTGCCCTCCAGCGCCGGGCTCATCCACCAGGTGCGCATCATCAATGGCCAGCCCTGCGCCGCCAAGAGCGGCCAGCCCACAGGCATGTTGACGGGCATTGTCATCACGGCCCCGGCATCGGTGCAGACACTGCAAATCAGCGGCCTAACCTCCGACACCAAGACTGTTAAAGCACGGGGGGGATTGGGGCAGAAGATGTTGGTGAGCAGgacccctcctctgtctccagcACCGAGACTAAAGAGAGAGGACAATCCTCAGAAACTTGCCTTCATGGTGTCCCTCGGACTTGTTACCCATGACCGTTTGGAAGAAATtcagaggaggaggcaggagcGTAAGCGAAGAACAACAGCCAATCCGGTGTACAGTGGAGCTGTGTTTGAGCCTGAGaggaagaagagtgcaGTGACCTATCTAAACACTCCGCTCCACCAGGGCACCAGGAAAAGAGGTCGCCCTCCCAAATACAGCAGCGTTCCGAAGCTGGGCAGCCACACCCCGACCTCCCCCTCCAGCTGTCTCACTGCCTCCTCGGCACCCGAGTGGCCCAACACAGGGGGGAGCTTCCCCTTCCATGTCCATCCCCACCACACTCTCCCCCTGCCCAGCCCCAGCTCTGGGGATGGAGACATCCATGAGGATTTCTGCACTGTGTGCAGACGCAGTGGCCAGTTGCTCATGTGTGACACATGCTCACGTGTCTATCACCTGGACTGCCTGGACCCACCCCTGAAAACCATTCCTAAAGGCATGTGGATCTGTCCCAAATGTCAAGAGCAGATATTGAAAAAAGAAGATTCAATTCAATGGCCAGGAACATTGGCTATTGTTCATTCCTATATCGCCTATAAAGAAGCTAAAGAAGAGGAGAAACAAAAACTAATGAAGTGGAGTGCTGAGCTGAAACTGGAGCGAGAACAGTTGGAACAAGGGGTCAACCAACTCAGTAACTCCATAACGGAATGCATGGAGACCAAAAACACCATCATGTCTCGACAGAATGAAATGCAAGTTTCGTTGGAGAAGGTCAAACACTTGGTCCGCCTCATTCAGGCTTTCCATTTCAGTCAAACCGTGGAGACCGAGGGTACAGGTGCCTTCACAGAAGACATCACAGAAGACATCGGGGCCAAGGATGCAATTGTCCCAGCTGAAAATGCAGTAGACGCCATCAACACCCATGCTGTAGCAGAAGTCCATATCCAGTCTGTGGATGGGGTAAAGGCCGAGGTCACAGCACTGAACAGCACCAATGTTGAAGCCGGGACGAGAGTTGTTGTAGCTCATGTTGCCACAGACAAGGTAGCAGGAGTCAGTGCTGAGGCTGCTGTTGACATCTGCGTTGAGCCTGCTGCCGAGGTCTACACTGAGACTGCAGTGGGCAGCAGTGTTGAACCTGTGGCTGAGTTTAATAACGCTGAGGAAGTGACGGAAGCCACTGCAGTAGTCGGTGCAGTGAACTTTACAGTGGCCACAAACAATGCTACCACTGAccttgtgtgtactgacatgagCATGGATGAGAGCTGTACTAACAACACTAACACCATACCTGAGAACAAGGTCACCACCACGAGCAGCACAGAGGAGGTGATagaagaggaacaggaggagaacACAAACATTGACCACAGCAGCACCAACAACAGCAAAACCTCAGAACCTTGCCAGCAATCTTTGCAAGCTCTTCTCGACAGTTTGGACAATAAAGACTAACACTCCATCTCTTGGATTGAAAACCCCCAACATAAAAAAAGAAGACTTTAACTTTCACTTTTGAAAGGTAACTGAAATTGCCAATCTATATACATACTTGATTCCAATGTATATTCAGACTGTGTAAATAGTAGATCTACAGCCCAAGTCTGAGATTGCTATTGGATGCTGTAGGTTATTATACCACAAACATGGGTGAAAGGGTGGCTTGTGTACCAGTGTCATGCCAATTTAAGGATAGAAAATAACAGTAGTAATGGTAAAAGTAAGATAATTTATAACATCACACCAGTGTGTGCCTGCAACAGTTCCCCTCAGAACTCTCATAGGGGTTGTATCTTAGGTTATCTTCTTTCCTGGGGATGCAGGTTAGAGATGTCTAAAGACTGCGTGCTGAACAGAGACCATGTTTCTACGGCATTAACTGAGAACAAAATAAAACCAAAAGATAAGCGAAACAGCTGAGGGACAGGGCTTTGAAAAAGTGTCAGTATTTGTTAACAGTGGGGAAACATTGAGGTGTTTGATCGTCATTGAAAATCAAATAGGTAAAACAGGAGAGCCTTCAGTTATCCCAATACCTTCCTCCCCTTTCCCCATTCTCACTCTTACATGACCGATAACTATGGACCCATTTACACAAAACCTCAGGCAAAAAAAGAAGAAAGTAAAGCAGCATCCACGTGCTTTGGAAGTATGAGGCAAACTGTTTATAGAGCTGGCTGGTTTAGGGCCTTGCTGAGGAAGACCCAGGTAACAAAGACGGTCATCTCAAGATAGAGTGGAGTCAGATCACGGTATCATGGTATCTTAATGTTTTAAAATGGTGTAGATCCAGTGCAGTAATTGAGTTAAATTTGTGAGTCAGTGTCAACTGTGAGCACTAAATGTGAAATTGCAATAATATTGCATTGTCAAAAACAAACACGCAAAAatatatctgcagtgtgtttcTTTTCTAGGATAAGATATTCATTCAGGTCTTCCTAGTCTTCAAACGTAAGTGCATTTCTGTTGCATCAAACAGTTGTTTGTTAATACATGTTTTTAACTGGCATAGTTATTATCTTTTAAAAGAGGTGACCTTTGCATATTATGAAATGTACGTTTTTGTTTAATTCTGAACTGCCAAAATGCTGTTGTATCCAAATATAGCAGGGACACGTCCACTAACTGTATGGAAAGATCAAGAACGAAATGTATTATTCAATACCATCTTGGGAATTGGCAGTCCCTGGTAAATAAGTGCTTATTCAACAATCTCATCAAAATATCTTTATTTTCTGGAAACTGGAGGGTTTGTTGTCTCAGTCCATTTTGGTGATTAAAGCACAAGCTTGCTGTataacaaatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65836 lncRNA downstream 983 54053779 ~ 54112156 (-) True G59220
TU65794 lncRNA downstream 6976 54048948 ~ 54106163 (-) True G59180
TU65800 lncRNA downstream 124653 53987981 ~ 53988486 (-) True G59185
TU65796 lncRNA downstream 125349 53986539 ~ 53987790 (-) True G59181
TU65804 lncRNA downstream 128315 53984637 ~ 53984824 (-) True G59189
TU66360 lncRNA upstream 31024 54255010 ~ 54259913 (-) True G59720
TU66362 lncRNA upstream 55246 54279232 ~ 54297288 (-) False G59721
TU66361 lncRNA upstream 71281 54295267 ~ 54297288 (-) True G59721
TU66446 lncRNA upstream 170058 54394044 ~ 54458919 (-) True G59794
TU66618 lncRNA upstream 475096 54699082 ~ 54705581 (-) True G59956
XM_021605344.2 mRNA downstream 93589 53989527 ~ 54019550 (-) True LOC110525320
XR_005051434.1 mRNA downstream 238903 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 239114 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 239114 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 245049 53853860 ~ 53868090 (-) True LOC110525263
XM_021605396.2 mRNA upstream 84064 54308050 ~ 54354009 (-) False LOC110525355
XM_021605403.2 mRNA upstream 84064 54308050 ~ 54354009 (-) False LOC110525355
XM_021605410.2 mRNA upstream 84064 54308050 ~ 54354027 (-) False LOC110525355
XM_021605420.2 mRNA upstream 89789 54313775 ~ 54354010 (-) True LOC110525355
XM_036980458.1 mRNA upstream 149125 54373111 ~ 54382652 (-) False LOC110525376
TU65545 other downstream 316125 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 350243 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 524369 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 686823 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 774752 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 505145 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 846406 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 926255 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 969311 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 979431 55203417 ~ 55203742 (-) True G60624

Expression Profile