RNA id: XM_021607603.2


Basic Information

Item Value
RNA id XM_021607603.2
length 2092
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110526548
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62505171 ~ 62526302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCATTGGCGTCACACTCGTCTCACAGTGTATCGAACGAACGACAGAACAGTTGTTATACTGCACGTAGAATGGAAGACCGTAAGTTGTGCAAGACACGTCTAGACAATCAAGCATCCTTATTGGGAACTACGCTACTAGATCAGTGTTTGCAATAGTGTTTGTATTATTGGTTTGTTGTAGGCTATATACGACCGTTTATCTGTCTCGATAGTGATATGTTGTTACCGTGGGCAGTTTATAGCCTGTAATAAGAAAGCTTCGACTTCTTCCTCAACCCAACCGTCAGCCAACGGATAAAGGACACATGCAGAAGCTTACAGATGGACTGGCTCACACCGGAGATGTGAAGTGTGTTATGTGAAGCCAAGGTGTCATCCCACCTTATAGGTGGTGGGGAGAGATGCTGCACTCTGTTGCCATGACAGCGGAAGTCCTGTTTGTTATGTGGTTTCTCATGACCAGTAGTCAGTGTAATCCCGTGGCAGACTTGTTGGTGAGCCGGGAACGCTTTGAGCGTGTCCTGACCCAGGCCAGAGAGGACAAGTATGACAAGCAGCAGGCCTCGGAGGGGGCGCTCAGTTACAGCACCCAACAACAGCTGAAGGAGATCAGCTTCATGGGCCTGGAGGCCAACAGAGGGGTCAGCAATAGAACTTCTGTCAACAGATCCAGGACGAACTCCAGCTCCCAGAAACGTGGTGGATCCAAGGGTGGGAAGGCATCACAGGAGTTGTGGGAAGAGCAAGAGGGGGGCCTGAGTCGAGTAGACGAGGGCCCTACAAGTGAAACAAACCTCTCTCTCGACGCTATCGACGAGTACGCATATCCAGATTACAGGGGGAAGGGCTGCATTGATGAGAGTGGCTTTGTGTTTGCCATCGGGGAGAAATTTACTCCGGGGCCCTCCACGTGCCCTTGCCTCTGCACCGACGAGGGACCCCTGTGTGCCAAGCCTGAATGTCCCAAAGTTCACCCTCGCTGCATCCGGGTGGACACCAGCCAGTGCTGTCCAGAGTGCAAGGAGAAGAAGAACTACTGTGAGTTCAGGGGGAAAGTCTACGCAACGCTACAAGAGTTTAAGgtGTCTCCGTGTGAGACGTGTCGCTgtgaggggagtggagaggtGTTGTGCTCTGTGTCAGCATGCCCTCAAACAGAGTGTGTCGATCCAGAGTATGAGCCTGATCAGTGCTGCCCCATCTGTAAGACCGGGCCAAACTGTTATGCAGACACACAAGTGATCCCAGCTGGGCGCGAGGTGAAGATTGATGAGTGTACAATCTGCTACTGCACGTATGAAGTGGGCACGTGGCAGATCGAACATCAGGCTACCTGCAGCAAGAATGATTGCCAGGTGAGCTAGAGACTGGCCCTGACAGTGGGTATGGGGGCAGGGGCTATGGATCCATAGGTGCCCTCGCCGTGTCCATGTCAGCCAGCACGCAACTCAACGCTAGCCTGATTAAACCAGACTGAACGCTGGTGAGCGCAAAAAATGTTGAATGCAGCATTCAGTCTAGTTTAACCTGGCTAACTCAATGCAGCCTTCACCCAGTCTATACCAGACATCAAGGTCACCCCCAGACCGTATGATTTCTGCATTTACAATCACAAGTATTATTAAATCAAGCTTTATATGAAGAGTTTGAATCCATATACAGAATATCTATTTATCTATGTACTGAATTATTTATGGAGAAAAACTatccaaaacatatttttttatagcCACTGCATTTTATTAAACTGCAATGAATTGGGTTAGAGGTCAAATAAACATCATGGAATGTATAGAATCCTTACTGTCTGTGTTTCATAGAGGTAGAAACCATAGCCTACTGACAGGTGGTGTCATTCTTATACGATGCACCACCTGAAGTAAAACAATGGGTAAAACTTGTAAGGTTTCAATATGAAAATTGTATGTAATTTTGAAAATAACTTAGTGAAGAAATGTAAGAAATTACATGACTGTTTTGTGATTTACTTATATGTATTTTGCAATTTCAATGTGTTTTGATTTCATGCGCTTTTTGTAAGCAGTTCTCTTTGTATTATGTATTCACGTTTAAAATAAACAGCAACCTGTG

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG:

id description
K24521 VWC2; brorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75678 lncRNA upstream 89047 62414680 ~ 62416124 (+) True G68384
TU75404 lncRNA upstream 522250 61981733 ~ 61982921 (+) True G68132
TU75402 lncRNA upstream 527108 61977849 ~ 61978063 (+) True G68130
TU75399 lncRNA upstream 529074 61975881 ~ 61976097 (+) True G68127
TU75390 lncRNA upstream 539993 61964814 ~ 61965178 (+) True G68119
TU75782 lncRNA downstream 5867 62532169 ~ 62532538 (+) True G68469
TU75785 lncRNA downstream 9306 62535608 ~ 62535941 (+) True G68472
TU75802 lncRNA downstream 13813 62540115 ~ 62540433 (+) True G68479
TU75823 lncRNA downstream 42051 62568353 ~ 62568619 (+) True G68498
TU75800 lncRNA downstream 83447 62609749 ~ 62610025 (+) True G68477
XM_036982186.1 mRNA upstream 12260 62435282 ~ 62492911 (+) False LOC110526533
XM_036982179.1 mRNA upstream 12260 62460060 ~ 62492911 (+) False LOC110526533
XM_036982195.1 mRNA upstream 12260 62460105 ~ 62492911 (+) False LOC110526533
XM_036982169.1 mRNA upstream 12260 62481563 ~ 62492911 (+) False LOC110526533
XM_036982202.1 mRNA upstream 12260 62481576 ~ 62492911 (+) True LOC110526533
XM_021607652.2 mRNA downstream 59562 62585864 ~ 62608428 (+) False LOC110526555
XM_021607617.2 mRNA downstream 59563 62585865 ~ 62608428 (+) False LOC110526555
XM_021607644.2 mRNA downstream 59563 62585865 ~ 62608428 (+) False LOC110526555
XM_021607661.2 mRNA downstream 59565 62585867 ~ 62608428 (+) False LOC110526555
XM_021607625.2 mRNA downstream 59735 62586037 ~ 62608428 (+) False LOC110526555
TU75188 other upstream 771783 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1189919 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2563107 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3180042 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3804792 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 748661 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2283287 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3389433 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3389433 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3761377 66287679 ~ 66288469 (+) True G73515

Expression Profile