RNA id: XM_021607652.2


Basic Information

Item Value
RNA id XM_021607652.2
length 2395
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC110526555
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62585864 ~ 62608428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgaatCGTCCAGTCTCCTGTGCGCCCAGCCTGGTGCGCCTCATCCCATCTCATGCATGGCTGCCAGTAATGGTCTACTGGGTGTCAGCTTTTATTTGCAGGACACAAAGCAAGTGCCAAGGGCTGCTGCATCGACGCCCCGAGCAGACTCGGCCTCTGGATAAAAGCAAGCAAAATGCTTCAGTCGAGCACAGAAACATAGAAATGTTAGGCTGGAAAGAGGAAGtacagtggagaggggagggaccgAGGGCAGAGTTCCATGGGGCTGCCGCGGCGCTTCGAACTTCTGCACATGGAGCGGGGGGGAGTTGGAAGAACTTCATATTGCAAACTCAAGGAATAGCAGAGTACCTGCACCGAATGGAGACGGAGGAGGCACAGGAGATGTCTCAGACGCCAGGCAGGGACAGCCCCCCTCCCAATGATGTGTCTGAGGACCAAGACGAGGCCATGCCCGTCCCAGAGGACCTGTCGGCCAGCTCCAATTTGCAGCACAACAATAGGGGTGACAAAGGAGGCATGGGAGAACGTCCGTTCCAGTGTAGCCAGTGTGGCGCTTCTTTCACCCAGAAAGGAAACCTGCTGCGCCACATCAAGCTCCACTCAGGAGAGAAGCCCTTCAagtgtcacctgtgcaactacgCCTGTCGCAGGAGAGATGCCCTCAGCGGTCACCTGCGCACCCACTCTGTTGGAAAGCCCCACAAGTGTGCCTACTGTGGGCGGAGCTACAAGCAGCGTAGCTCTCTGGAGGAACACAAGGAGCGGTGCCACAACTACCTCCAGTGTATGGGGCTGCAGAACAGCATCTATAcagTAAAGGAAGAAAGCAACCAGAATGAGCAGAGGGAAGACTTAAGCCAGACGGGATCTGAGAGAGTCTTGGTGCTAGAAAGACTAGCTAATAATGTAGCCAAACGTAAGAGCACTATGCCACAGAGGTTTGTAGGTGGGAAGCGTCTCTCCGACCTCTCCTTCGAGGGCAACCCCGGGGCACTGATGCAGCCTCATGTCATCGACCAGGCCATCAACAGCGCCATCAGCTACCTGGGTGCCGAGTCCCTGCGACCTCTCATCCAGACCTCCCCAACCTCCTCTGACGTGGGGGTCATTGGCTCCATGTACCCCCTCCACAAGCTGCCTCCAGAGGGACAAGGGGCAGGGGGCCACGGCCTGTCAGCCAAGGACAGCGCAGCTGAGAATTTGCTGCTGCTCGCCAAGTCCAAATCAGCCTCCAGCGAGAGGGACGGCTCCCCCAACCACAGTGGCCAGGATTCCACTGACACGGAGAGCAACAATGAAGAGAGGGCAGGTGGCGGGGCATCGGGCCTCATCTACCTGAACAACCACATCACGCCTGTGGTGCGTAATGGCGTGCTGCCCCTGGTAAAGGAGGAACAGCAGCGGCAGTACGAGGCCATGCGGGCCAGTATCGAGATGGCCTCAGAGGGGTTCAAGGTgctgagtggagagggggagcagTTGAGGGCATATTGCTGTGAACACTGCCGCATCCTCTTCCTAGACCACGTGATGTACACCATCCACATGGGCTGCCACGGCTTCCGAGACCCCTTTGAGTGTAACCTCTGTGGCCACCGCAGTCAGGACCGATATGAGTTTTCCTCACACATGACCCGAGGGGAGCATTGCTACTGAGTGGCCCACtgaacacacactaccacacgaacacacacacgctcacacagacatacccccacacacacttgCTATTTGAAAGTGGCGATTTTTATACATTGTCAAGAAATTGCATGTTTGAAAAACAAAGAACAAGACTAGTTTATGTTAACTTCACATGTTCAGGAGGAAAAGGGAAACGATTCCTCCATCTGCTTTTTAGAAAACAAAAGGTGGTAAAATAacaatgaacaaaacaaacaacttAAAAAATGATTGTGCTTCAGCAGTAAGTATCATGTGTCACATACGGTATAGTTTTAAGTCTTTGATCTACCCTTTGATGTCTGTATACATTACATAAATGTCTCTGTTTTCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGACAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGGAATATCTGatagcctacctggataaatatcTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGATAGCCTACCTGGAGAAATATCTGTATATTTTATTCTAAAGAATACAATCATACAATAAAGTTGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75823 lncRNA upstream 17245 62568353 ~ 62568619 (+) True G68498
TU75802 lncRNA upstream 45431 62540115 ~ 62540433 (+) True G68479
TU75785 lncRNA upstream 49923 62535608 ~ 62535941 (+) True G68472
TU75782 lncRNA upstream 53326 62532169 ~ 62532538 (+) True G68469
TU75678 lncRNA upstream 169740 62414680 ~ 62416124 (+) True G68384
TU75800 lncRNA downstream 1321 62609749 ~ 62610025 (+) True G68477
TU75801 lncRNA downstream 4237 62612665 ~ 62617264 (+) True G68478
TU75855 lncRNA downstream 11890 62620318 ~ 62620552 (+) True G68530
TU75787 lncRNA downstream 17971 62626399 ~ 62630539 (+) True LOC110526580
TU75872 lncRNA downstream 50493 62658921 ~ 62659149 (+) True G68547
XM_021607603.2 mRNA upstream 59562 62505171 ~ 62526302 (+) True LOC110526548
XM_036982179.1 mRNA upstream 92953 62460060 ~ 62492911 (+) False LOC110526533
XM_036982195.1 mRNA upstream 92953 62460105 ~ 62492911 (+) False LOC110526533
XM_036982169.1 mRNA upstream 92953 62481563 ~ 62492911 (+) False LOC110526533
XM_036982202.1 mRNA upstream 92953 62481576 ~ 62492911 (+) True LOC110526533
XM_036982281.1 mRNA downstream 13532 62621960 ~ 62626710 (+) False LOC110526580
XM_021607695.2 mRNA downstream 23126 62631554 ~ 62651962 (+) True polr1b
XM_036955606.1 mRNA downstream 127343 62735771 ~ 62739992 (+) False cyp1b1
NM_001174149.1 mRNA downstream 127913 62736341 ~ 62738785 (+) True cyp1b1
XM_021607771.2 mRNA downstream 255773 62864201 ~ 62874655 (+) False LOC110526628
TU75188 other upstream 852476 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1270612 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2643800 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3260735 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3885485 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 666535 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2201161 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3307307 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3307307 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3679251 66287679 ~ 66288469 (+) True G73515

Expression Profile