RNA id: XM_021607695.2


Basic Information

Item Value
RNA id XM_021607695.2
length 5005
RNA type mRNA
GC content 0.50
exon number 15
gene id polr1b
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62631554 ~ 62651962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgagattaataatgtagggtatgtaaacatattaggtagcattgtttaaagtggctagtgatatattttacatcattacATCAATACATAGAGCAACTGAGATCGGATATCTATAGACTTCTAGCTGTTTGGTTACAGTGGACATTATCTTTGATGCTGAAACTGATTTAGACATAGCATTACACTTTAGATGCTGTTTGGTAATTCATTTTTCTCACTTCTATGAATAGTCAACCAAACTAATACAATTACATTCAACAAGACGGTTTGATTTAGTTTGATAGCTCTGAAAATTGGATGCTGTCCCTTTAAAGGAATTGACCTTTCACTCACTTCCTATTACAACGATTGTACTTCCTGTGTAACTATGCGCATGTGGTAAACAAGAATAAGCATGGATTTTGCGAGTAAGTGGAGTAGTTTACTGACAAGTCCAAGCCTTAAACATTTAACAGAAGCAGGCTACGGCATACCGAAGGAAAAACAACATGCCGCTGTTCAGGACCTAACGAAGGCTCATATTGAGTCGTTTGACCAAGCAGTTTCAGAAGGACTGTGTCGTGCTGTACAGGCCATCCGTCCCTTGGAGTTTATGTTTAAAAATGACCGGATCAGCCTGGCATTTGTGGAGGCCACCATCTTTAAACCAGTGGTGGGCAAAGGAAGCATCTGCCGGGACCTGAGGGTGTTCCCAGCAGAGTGCAGAGGGAGACGCTGCTCCTACCGGGGGAAGCTTGTGGCAGATGTCAGCTGGTCCGTGAATGGGGTTCCCAAAGGCATCATCAAGCAGTCTCTGGGCCAGTTGCCCATCATGGTGAAGTCTAGGCTGTGTAACCTACATGGGCTCCCTCCCAAAGAGCTCATTGAGCACCATGAGGAGGCTGAGGAAATGGGTGGTTATTTTATTGTGAATGGGAACGAGAAGGTTATTCGCATGCTGATCATGCCAAGGAGGAACTACCCTATCGCTATGTCAAGGCCGAAGTGGAAGAACAGAGGCCAGGGATACACTCAGTATGGTGTCTCAATGCACTGTGTGAAGGAGGAGCACACCGCTATCAATATGAACCTGCATTACCTGGACAATGGGACTGTGATGCTCAACTTCATATACCAGAAAGAGCTATTCTTCCTCCCCCTGGGCTTTGCACTAAAGGCTCTAGTGGACTTCACAGACTTCCAGATTTACCAGGAGCTGATCAAAGGTCGTGAGGCGAACTCCTTCTACAAGAGCTGTGTGTCTGAGATGCTGCGACTCGTCATGGAGGAGGGCTGCATCACCCGCGGCAAGGTGCTCAACTACCTGGGCGAGCGCTTCCGGGTCAAGATGAACCTGCCAGAGTGGTACACCCATGAACAGTGTGCCAACTACCTGCTAgaCCAGTGCATCTGTATCCACCTGAGGTCGGACGTGGAGAAGTTCTACCTGCTGTGTCTGATGACGCGGAAGCTATTCACGTTTGCCAAGCAGGAGTGCATGGAGGAGAACCCGGACAGTCTGATGTGTCAGGAGGTGCTCACGCCAGGACGGCTCTACCTAATGTTTCTCAAGGAGAAGATGGCTGCCTGGATGGTGTCTGTGAAACTGTCTATGGACAAGAGGGCCCATAGGCTGACTGGTGGGATGAGCTCTGATAATCTGGTGAAGATGTTCAACATGGGCTCTGATGTTACTCATCCCTTTGAGTATCTGCTAGCCACTGGGAATCTCACTTCAAAGACGGGTCTGGGCATGCTCCAGAACACGGGACTGTGTGTGGTGGCCGACAAGCTCAATTTCATCCGCTACCTGTCCCACTTCCGCTGTGTGCACAGAGGTGCAGCCTTTGCCAAGATGAGGACCACCTCCGTACGTCGTCTGCTGCCCGAGTCCTGGGGCTTCCTGTGCCCTGTGCACACCCCCGACGGAGAGCCCTGCGGCCTCATGAACCACATGACGGCCCACTGTGAAATCATAGCCCCGGCCCTGCCCACCACCACCCTCCCTGCCCTGCTCTGCTCCCTCGGTGTGACTCCTGTGGATGGTTCTCCTGGCAGGGCCTACACTGACTGCTATCCTGTGCTCCTGGATGGTGCCATGGTGGGTTGGGTAGAGACTGATCTGGCCCCCTTCCTCGCAGACTCCCTCCGCAGGTTCAAGGTGTTGAAGGAGAAGAAGATCCCTCCCTGGACTGAGATAGTTCTGGTTCCCCAGACCAGCAAGGCCAGCATGTACCCAGGCCTGTACCTCTTCACCACCCCCTGCCGCATGGTGCGGCCTGTTCACAACCTGGCCCTGGGCCAGCAGGAACTGATCGGCACCTTTGAACAGCTCTACATCAACGTGGGCATCAGTGAGGATGAGATTGAGCCGGGTGTGACCACCCACCAGGAGCTCTTCCTCCACAGCATGCTGAGCGTGGTGGCTAACTTTATCCCTTACTCGGACCACAACCAGAGTCCCAGGAACATGTACCAGTGCCAGATGGGTAAACAGACCATGGGCTTCCCCCTCCACTCGTTCCAGGACCGCTCGGACAACAAGCTGTACCGCCTTCAGACCCCTCAGAGCCCTCTGGTCAGGCCTGTCATGTACGACCACTACAACATGGACAACTACCCCATCGGCACCAACGCCATTGTCGCTGTGATCTCCTACACTGGCTACGATATGGAGGACGCCATGATCCTGAACAAGTCCTCGTGGGAGAGGGGCTTTGCTCATGGCTGTGTTTACAAGACTGAGCTGGTGGACCTGGCAGAGAAGATGAAGGGCGAGGACAACCTGGTGTTTGGGGTCAAACCCGGTGACCCCAAGGTAATGGACAAACTGGACGCTGATGGGCTGCCCTCCATCGGCACAGTGCTACAACATGGAGACCCCTTCTACAGCTACATCAACCTCAACACCGGACAGACCTTTGTCAACTTTTACAAGAGTCAAGAAAGCTGTGTAGTAGACAACATCAAGGTGTGCAGCAATGACGTGGGCTCGGGCCGCTTCAAGCGCGTCTGCATCACCGTGCGAGTGCCCCGTAACCCCACCATCGGGGACAAGTTCGCCAGCCGCCACGGGCAGAAGGGTATCCTGAGCCGCCTGTGGCCTGCCGAGGACATGCCCTTCACAGAGAGCGGCATGACCCCCGACATTCTGTTCAACCCTCACGGCTTCCCCTCCCGCATGACCATCGGCATGCTCATCGAGAGCATGGCCGGCAAGTCGGGCGCCCTCCACGGCCTGTGCCACGACGCCACTCCCTTCACTTTCTCCGAGGAGAACTCGGCACTGGAGCATTTTGGGGATATGTTGCGCGCTGCTGGCTACAACCACTATGGCACCGAGCGCCTCTACAGCGGCCTCAGCGGCCTGGAGCTAGAGGCGGACATCTTCATCGGCGTGGTCTACTACCAGAGGCTGCGTCACATGGTCTCCGACAAGTTCCAGGTGAGGACCACTGGCGCGCGGGACAAGGTGACCAACCAGCCGGTGGGCGGAAGGAACATCCAGGGGGGCATCCGCTTCGGGGAGATGGAGCGCGACGCCCTGCTGGCCCACGGGACATCCTTCCTGCTCCACGACCGCCTCTTCAACTGCTCTGATCGCTCTGTGGCACAGGTGTGTGTGGACTGTGGTAGCCTACTGTCCCCTCTACTGGAGAAACCACCACCCCACTGGTCGGCCACACGCCACCGCAAGACTGTCTGCCTCCTCTGCGGCAAGAGTGACTCCATCGATACGGTGTCTGTGCCATACGTCTTCCGCTACTTTGTTGCCGAGCTGGCGGCGATGAACATCAAAATCAAATTGGACGTGAAGTAAATTCAGTGTGAAGTTTGTTCAGTCTACCTACCAGCCACAGACAGTGCTATATTGTGCACAGGAAGTTTGTCTTCTCCCGTGTGTGACTGGCAGTGTTCAGATATTAGGCCTTATGTTTTGTATTAAATGCTTTATCTCCAAATATTATCTGTCACatgtaaaagtaaaaaatatgATTGCAAAGAACTTACTGGAGTTTACACAATTACCTGAACTACAAAGCCATACTGCTCACCAGAATGGCCAAGTGCTTGAGGTTTACCCTCTTGTTGTCCAGAATGGTCTCTACCTATCATAAGTTATGGCTAAATTGAGACTTTGGTCAAGGATGGATAGAACTTTCCAAAAATGTTCAGAAGTTACAAAGATATTGTACAGTAACTGTCTAACATACACAATATTGTTTTGTAAGTCAGTATATTTAGAGTGAAATACTCTAAGAAAATACATTGTGATGGTGTACATTGCGCATGACACAGTCGATTGTGACTACTAGGTAATAAAAGGTTTGTCAATGACTAACTACACTTTACTCTTCAGACTGACAATCGATACACGTTCAAGTTGTTCCTGTCATAACCAGCACTTTGAAGGAGACAATGTTGTTCACAGGGCTTTAGATTCTTGTGTCCTGTTTCTTATACCTACCAGAAgatgctggtgggaggagctgtaggaggacaggctcattataatggctggaatggaatcaatggaacggagcGTTGTTTCCATTGGTttgattccgttccagccatttaCAATGAGccgctcctcccaccagcccacCAGCCCACTGCTACCTACTTCCCCCAACAGATAAAGTAGTCAAAtgtataatattttttattttaagagTAGACAATGACCAAATGACGTGGCCTATTGCATTGTTATGTAAACACAATTATTACACCCTTTCACCCACATTGAAGATGAAAGAAAAGCAGCTGATTTTGATTTTCACAATTCCCTTTTTACAAGAAACCCATGTCATTAATGCAGGCCTTTGGAAACAATCTTCATTTAcggtacatttggaaagtattcagaccccttgactatttccacattttgtttgtaAGCCGTATTCTAACATtgccccctcaatctacacacaataccccataataacaaagcaaaaacagttttatttttaaatttgcaaatgtattaaaaataaaaatgtaatcacataagtatt

Function

GO: NA

KEGG:

id description
K03002 RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75787 lncRNA upstream 1015 62626399 ~ 62630539 (+) True LOC110526580
TU75855 lncRNA upstream 11002 62620318 ~ 62620552 (+) True G68530
TU75801 lncRNA upstream 14290 62612665 ~ 62617264 (+) True G68478
TU75800 lncRNA upstream 21529 62609749 ~ 62610025 (+) True G68477
TU75823 lncRNA upstream 62935 62568353 ~ 62568619 (+) True G68498
TU75872 lncRNA downstream 6959 62658921 ~ 62659149 (+) True G68547
TU75880 lncRNA downstream 13170 62665132 ~ 62665475 (+) True G68555
TU76898 lncRNA downstream 165404 62817366 ~ 62877244 (+) True G69461
TU76953 lncRNA downstream 230975 62882937 ~ 62883175 (+) True G69507
TU76957 lncRNA downstream 238114 62890076 ~ 62890408 (+) True G69511
XM_036982281.1 mRNA upstream 4844 62621960 ~ 62626710 (+) False LOC110526580
XM_021607617.2 mRNA upstream 23126 62585865 ~ 62608428 (+) False LOC110526555
XM_036955606.1 mRNA downstream 83809 62735771 ~ 62739992 (+) False cyp1b1
NM_001174149.1 mRNA downstream 84379 62736341 ~ 62738785 (+) True cyp1b1
XM_021607771.2 mRNA downstream 212239 62864201 ~ 62874655 (+) False LOC110526628
XM_021607763.2 mRNA downstream 212252 62864214 ~ 62874655 (+) False LOC110526628
XM_036982370.1 mRNA downstream 219985 62871947 ~ 62874655 (+) True LOC110526628
TU75188 other upstream 898166 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1316302 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2689490 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3306425 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3931175 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 623001 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2157627 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3263773 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3263773 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3635717 66287679 ~ 66288469 (+) True G73515

Expression Profile