RNA id: TU75787


Basic Information

Item Value
RNA id TU75787
length 2518
lncRNA type sense_over
GC content 0.36
exon number 2
gene id LOC110526580
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62621960 ~ 62630539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGGGTTTATCCACAAAAGTTAGCATTCCTACATCTTTGTTTCATATCATGGTTATTCACAAAGCCCCGGAGAGTTTTGTGTACTGCAGTTTTTAAAAGTATTAAAGCAAAAAAATAGGAGGCATCCAGTTTCTATTTTATTGCTATGTAAATTGTATTATAGCTATTTGATAGCTATTATTCTGCGCATGCCGTGTAGTTTTTTTAGGTCTTCGATTTGAGACCTTTTTTCCCCAAGTTAATTTAGTCAGTGTTGTTAATTCCCCCCTTGTATAAGAGAAGATTCATAGACAGATTACTTATTTCTGTCAACAGAGTATTTGTTGAATGACTAGAGAAACCTTCCCTGTCCAACTGAGACTAGATTTGCAACTTTCTAACATTTCAAACTATTTTGAACCTTCTATGGTTCTGCCAGTAAAACTGTTAGAATTAGAATCGGTCACTTTTATTCTCCCAAGTACATTTACATATAGGCCTACTTGGAATTTGATTCGGTGAAATGGTGCTGCCACAGTACACAGAATCAACAaacagaatatagatgataAACATATACAGATGGAATATATTGACAAGGAATTTACGAATCCACATACACTGTACACAGTTACGCACAGGGGACCTCCGCTACAGCTGTAAATCAGTTTTTGTCATCTTAAGAGGGACTGCATGTTGGTGTGGATGCATGTCAGTGTCTTATCTCCTAATGCAAGTAGGCCTATTCTCCCATTTTGCCTCTAATACTGAGAGTTCTTAGCCAAGCACTTCCTTTAAAATGGTCTCTTTATACTTTTTACCTTCCCAATAGGTCCATGAGACGCACctgtttgtcaagaactgcattgCATTTTGACACCAGATGTTTTGAAATAGATTTGCGTAGTTCTGCACCAATTGCTTTTGCAGaaatgtttgtttagtgtgtgtgttggtgatgcTTGCTCAAAGAAAATGTGTTTCTTGTTAGTTTTTGCTTGTTTATTTAAAACATGTAGTGAACTTGAATTAAACGTAGTAGCTTCAACCCCTGAATTGACTTAATGTCAATGcaagtttttttaatttttttttaagcGGCAATCCATAGCAGTGAAACGGCCACGTCCATTTGCGATCTTACAACAACAGACCaacactgtcccccccccccctcggacATCATTGCATGCGCGATAGAACAGCAGTActgagtttttttttcttctttttaccACGATGCTGGATGCTCCTTTCTTCAAAACGATAACAAATGCGCCTGGGGCGGATCTCAGATTTaagtgtatttattttttaagtagTTTAAGACTATAAACACAGTCAGTTAGGTTTTTAACACCGCTTCCATGATGTTAAGTGAACTTGTGAAACCTGCCTGCTAGAAAGTTGTTTTCCCTGCCCTTGTCTCTTTCTGTGTTTACACTGTGATATTCAATGTAGAACACCTGACCACATTCAGTTTACAGATGCTTTGTAGCATTATCACCAACAGTTATCCCATAGATTAAGTTACCTTGTCCTATGTTAAACTTTGTTTTAAGTATGAGTTAGTCCCTTAGCCACCAACTTCTTTCTTCAATATCACacattttcaaatatttttaGTTGAGGAAATGCTTCAACGTGTTTTGAGTGAAACACTACTTAAGGGACAACATTGAGACATTTAATCACTGtcttttttttatgtttaaagATTGCTATGAAGTATGGTATGAATGACTGCTTGAATAGTATCTGTTTGATATGCACATGGTCAAAGCATACAATGTTTATGAATTATAATCTATTTGTGGTTAAATGTTCGGTTAGTTTGTATATCAGAGGGGCACAAAAAAAAGGTGTTGTTTTCTAGATTGTTTTGCAAAATAAAAAAGACCAACTGTATTATTCAACACATTGCTTGGGAAAACAACCAAAGGAAATGATCAGTATTATTATACAAATTGGGGAAATGTCTTTCCATCAAAGGGAAGGGGTGCCTTAGTGGGAATTGCCTCTTGATGTTGGGAAGAAGCAATAGACCTCCTGCATATAAATGCACCTTTCATTTGTTTGATTGTAAAGATGTGAATTTGCCTATTGCTATTTGGcatatgtgtctgtgtgactgtttTAATTGTTCAATCTTTTGTAATGTCTGGTTGTACTCATGCAGAGTTTCTTTGCACTGAACGTTTCCCATTTTTAATTACCTGCTTGGTAGGTTATGAATTCTTATTTCTTATCAATGAGAACTTGTTTGTATGTCTAAAATCAATCCACCCCTCAGTATTACTTCCCCAGCTATGAAATCTGTGGGtttgatgtatttcaagtcctTTTAAAGTGCATTCTGTATCTTCCTTTGAGTGTATCATGGCCATGGGAGACAAAGAAGTTAGATTGCAACTTTAAATCAATCATTATCAAACATTTTCACTAAACCAAGGCAGCCAAGAATAAATAAATCGGTTGACACAAAAGCAACATTGGCACATTGAAATGTTAACCTCTCCCCCAGTCAAAATGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75855 lncRNA upstream 5847 62620318 ~ 62620552 (+) True G68530
TU75801 lncRNA upstream 9135 62612665 ~ 62617264 (+) True G68478
TU75800 lncRNA upstream 16374 62609749 ~ 62610025 (+) True G68477
TU75823 lncRNA upstream 57780 62568353 ~ 62568619 (+) True G68498
TU75802 lncRNA upstream 85966 62540115 ~ 62540433 (+) True G68479
TU75872 lncRNA downstream 28382 62658921 ~ 62659149 (+) True G68547
TU75880 lncRNA downstream 34593 62665132 ~ 62665475 (+) True G68555
TU76898 lncRNA downstream 186827 62817366 ~ 62877244 (+) True G69461
TU76953 lncRNA downstream 252398 62882937 ~ 62883175 (+) True G69507
TU76957 lncRNA downstream 259537 62890076 ~ 62890408 (+) True G69511
XM_021607617.2 mRNA upstream 17971 62585865 ~ 62608428 (+) False LOC110526555
XM_021607695.2 mRNA downstream 1015 62631554 ~ 62651962 (+) True polr1b
XM_036955606.1 mRNA downstream 105232 62735771 ~ 62739992 (+) False cyp1b1
NM_001174149.1 mRNA downstream 105802 62736341 ~ 62738785 (+) True cyp1b1
XM_021607771.2 mRNA downstream 233662 62864201 ~ 62874655 (+) False LOC110526628
XM_021607763.2 mRNA downstream 233675 62864214 ~ 62874655 (+) False LOC110526628
TU75188 other upstream 893011 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1311147 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2684335 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3301270 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 3926020 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 644424 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2179050 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3285196 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3285196 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3657140 66287679 ~ 66288469 (+) True G73515

Expression Profile