RNA id: XM_036955606.1


Basic Information

Item Value
RNA id XM_036955606.1
length 3230
RNA type mRNA
GC content 0.43
exon number 3
gene id cyp1b1
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62735771 ~ 62739992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGATGCTATTTGACACTTCTGTTTGTGATAAATCATTAAACTCGGGACAGCAGAAGGCTATTCGCATGTGGAGTGTGGAAGGTCTAGAACTGCACCAAATGACAAATTAAGTTACTGGACGTATAATGGGTTACTTGCTTGTCTATTGTGCAGGTTATGAGGATTTTATTCTCCAATAATCCTTACTTTCAATCACTGGATCCGCTATATAAAGACGTGACCTATAATTACCGTGCTTCTTGCATTTATATTAAAATGTAGTCTACCATCGGCATCGACGGGACAAAGGACAGGAGCTTATTCATCAAAACATCTATTAGTAACCGACAGACTGCAATTAACATAAGGCTGTTCTTTACTTGGAAGAAGCAACGAATTGACTGCAAGGCTTCATAATGGACATGCACATTATATTCGAGGAGATGACCTGGCCATCGCCACGGAGTATATTATTGGCGTCTTTGACTGTCGTCTTTGCCGTGCACCTGTGGCGCAGGATCAGGCGGAACTGGGACGTATGCAGCCCGCCTGGACCCTTCGCTTGGCCGGTCATTGGGAACGCATTAGAGGTTGGCAAAACTCCTCACCTCTATTTCTCTCGCATGGCACGGAAATATGGGGATGTCTTTCGAATCAAACTTGGCTGCCGGGATGTCGTGGTGCTGAATGGCGACGCAATCAGGCAGGCGCTCATCAAAAATGGATATGATTTCGCAGGCAGACCGGACTTTACTTCTTTTCAATACGTTTCCAATGGCGATGGCATTGCTTTTGGAAAATTCAGCGAATGGTGGAAAGTGCACCGAAAAGTAGCCCAATCTACTGTTCGGATGTTTTCCACCGGCAACATGAACTCCAAAAAGACCTTCGAAAACCACGTTGTCTGCGAAGTTAGGGAGCTGCTCCGTCTTTTCCTGGGAAAAACGCAAGAGCACAAATATTTCCAGCCGATGACATACTTGGTGGTATCAACAGCTAACATAATGACCGCCGTGTGCTTTGGAAAGAGGTATTCCTACGACGACGCAGAGTTTGCGCAAGTTGTGGGGCGAAATGATCAATTCACCCAAACAGTAGGGGCTGGGAGCATCGTTGATGTGATGCCTTGGCTCCAGTATTTTCCCAACCCAATAAAAAcaatttttgacaattttaaagAGCTCAACCGGGAGTTCAGTAAATTTATCGTTACTAAGGTTGTCGAGCATCGAAAGACCATTCAGCCAAGCACAATCCGGGACATGACAGATGCTTTCATCATGGCATTGGACCATTCTCAGGACAGCTCGCCCGGAGTCTCACCAGGCAAAGATTATGTGCCACCTACTATTGGTGATATTTTTGGAGCAAGCCAAGACACACTGTCTACTGCACTCCAATGGATCATTCTGATACTTGTGAGGTTTCCTCATATCCAGCTGCGTCTCCAAGAGGAAGTGGACAAAGTGGTCTACCGGAGCCGTCTGCCCACCATGGAAGACCAGTCTCAGTTGCCTTACGTGATGGCCTTTATCTACGAGGTGATGCGCTTCACCAGCTTTGTGCCTCTCACCATTCCCCACAGCACCATCACCGACACTACCATCATGGGCTACACCATCCTCAAGGACACAGTGATCTTCATCAACCAGTGGTCCAGCAACCACGACCCCGCCAGGTGGACACAACCAGAGACCTTTGACCCCCTGCGCTTCCTGGACCAGGACAGCTCTTTGAACAAGGACCTGGCCAGCAGTGTGCTCATCTTCTCCTTGGGAAAGAGGCGGTGCATCGGAGAAGAGCTGTCCAAGATGCAGCTGTTCCTATTTACTGCATTGCTGGCACACCAGGCCCACTTTAGTCCCGACCCGGACAAGCTGCCCACCATTGACTACACCTATGGGCTGACCCTGAAGCCCAATAACTTCTCCATAGCAGTAAATCTACGGGACACCATGGACGTCTTGGAGGAGGCTAGCCAAAGGCCCTTCTATGGGGAGACCCAGGAGGACACAGGCAACTCCAGATCAGACTGAGAATATAGTTGCCAAAAGCATTACAAAAAACGGCAAATGAAGCTTTTAAGAAGTAGATTCATGAACTGAAATTCTTCCTCATGTGCTATCAGGTATCAGCTACCAAAtagttaaaaaaatgtatttatgaacTGAACACTCAGGCAAAATACCCTTCATATACATCTTTATTTTCTTTGTTTTACAGGTAATCACTCATATGACTGTGGCTCACAAAAATGCAACTTTTAAAGATGGTTTTTAATAGGTTATTGCACTGATGTTTGTTTATCTTTCACTGGAACATgccagaacatttaaaaaaaagcgtGCCGTGTTCATCTTAGGGCGATGGCATGTTCTTTTACACTTGTTTGCCACTTCACCTGCCTGACTGTATTTACTGGAATATTGACCAATTGGAGTTGATTCAGTTATTTTGCTTGCACCCACCACCTCAGAGAGTGTACCTTTTATGGCCCAAATGATCTCCCAACAAGGTCAATATGATACAGAGAGAATCTTGATTTATGTAAATATAGGTAACTAGGTAGATAGTAATACCAACCTTCTTACCATTAAAAACAATAATTATGTTTTAAGTGACATCGTGTTGGTAATTCTAATGAGCAGCCCTACCCTAAATTTGACATATGCACTAAGGTTTTACAGAAAACTCAGATTGTTGTGCTTTTTAAAAAATTTAGTCaactttaaaaaacaaaatatgGCAACCAGCTCTCATCAAGgcacagggtggctactttgaagaatctaaaatctaaaacacATTTAGATGTCTTTatcacttttttgattactacatgattccatgtgtgttctttcatagttgtgatgtcttcgctattattctacaatgtagaaaatagtaaaaaataaagaaaaaccctggaatgagtagggtgtggacaaacgtttgactggtactgtacattcgaGTGTGTGTTATGTCTTCATGCGCTTGAACGTTCAAATGGCTGTTCTTCATATATACCATATCATTAAGATTTTTCATTTAAGATACCAGTTATCAAATGATTTATTCTCCATGTTGTATTGAATAGAGAACATAATCATTGTGTTACTGCAACTGTGATGTTGCTCCGGTGAGAGTATTTTACGATATCTATCTGAACGGATGACATTGCGTTGATGAGTAAAGGTCATATGTGTGATATTATACAGTAATACTAAATTAAAGGACATTTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75880 lncRNA upstream 70296 62665132 ~ 62665475 (+) True G68555
TU75872 lncRNA upstream 76622 62658921 ~ 62659149 (+) True G68547
TU75787 lncRNA upstream 105232 62626399 ~ 62630539 (+) True LOC110526580
TU75855 lncRNA upstream 115219 62620318 ~ 62620552 (+) True G68530
TU75801 lncRNA upstream 118507 62612665 ~ 62617264 (+) True G68478
TU76898 lncRNA downstream 77374 62817366 ~ 62877244 (+) True G69461
TU76953 lncRNA downstream 142945 62882937 ~ 62883175 (+) True G69507
TU76957 lncRNA downstream 150084 62890076 ~ 62890408 (+) True G69511
TU76962 lncRNA downstream 156161 62896153 ~ 62896368 (+) True G69516
TU76963 lncRNA downstream 156794 62896786 ~ 62897000 (+) True G69517
XM_021607695.2 mRNA upstream 83809 62631554 ~ 62651962 (+) True polr1b
XM_036982281.1 mRNA upstream 109061 62621960 ~ 62626710 (+) False LOC110526580
XM_021607644.2 mRNA upstream 127343 62585865 ~ 62608428 (+) False LOC110526555
XM_021607771.2 mRNA downstream 124209 62864201 ~ 62874655 (+) False LOC110526628
XM_021607763.2 mRNA downstream 124222 62864214 ~ 62874655 (+) False LOC110526628
XM_036982370.1 mRNA downstream 131955 62871947 ~ 62874655 (+) True LOC110526628
XM_021607789.2 mRNA downstream 183997 62923989 ~ 62948072 (+) True LOC110526643
XM_036982416.1 mRNA downstream 243951 62983943 ~ 63024360 (+) False ide
TU75188 other upstream 1002383 61729765 ~ 61733388 (+) True G67930
TU75047 other upstream 1420519 61314874 ~ 61315252 (+) True G67806
TU73321 other upstream 2793707 59941486 ~ 59942064 (+) True G66188
TU72488 other upstream 3410642 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 4035392 58699296 ~ 58700379 (+) True G64338
TU77508 other downstream 534971 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 2069597 64809589 ~ 64901624 (+) True LOC110526969
TU80728 other downstream 3175743 65915735 ~ 65922285 (+) False LOC110527164
TU80729 other downstream 3175743 65915735 ~ 65922285 (+) True LOC110527164
TU81252 other downstream 3547687 66287679 ~ 66288469 (+) True G73515

Expression Profile