RNA id: TU62506


Basic Information

Item Value
RNA id TU62506
length 203
lncRNA type intronic
GC content 0.55
exon number 2
gene id G56162
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51255351 ~ 51255644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagttttaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggttgcaaagttcaagggggccgaatactttcgcaaggcactgtatatataTAGTTTGTAGAGGCGGGTAGCTGGTAGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62500 lncRNA upstream 9100 51245958 ~ 51246251 (+) True G56156
TU62496 lncRNA upstream 15713 51239330 ~ 51239638 (+) True G56152
TU62296 lncRNA upstream 61331 51175634 ~ 51194020 (+) True G55963
TU62238 lncRNA upstream 160776 51092732 ~ 51094575 (+) True G55908
TU62060 lncRNA upstream 303389 50951733 ~ 50951962 (+) True G55731
TU62530 lncRNA downstream 33465 51289109 ~ 51289512 (+) True G56185
TU62495 lncRNA downstream 77789 51333433 ~ 51342260 (+) False shank2b
TU62494 lncRNA downstream 83423 51339067 ~ 51340927 (+) True shank2b
TU62766 lncRNA downstream 187320 51442964 ~ 51443171 (+) True G56415
TU62808 lncRNA downstream 218052 51473696 ~ 51473921 (+) True G56455
XM_021604338.2 mRNA upstream 85007 51164077 ~ 51170344 (+) True acte1
XR_005051364.1 mRNA upstream 99955 51154507 ~ 51155396 (+) True LOC118964319
XM_021604316.2 mRNA upstream 179906 51071696 ~ 51075445 (+) True LOC110524544
XR_005051360.1 mRNA upstream 262232 50991983 ~ 50993119 (+) True LOC118964313
XM_021604300.2 mRNA upstream 384004 50856582 ~ 50871347 (+) True c1h11orf49
XM_036979578.1 mRNA downstream 102644 51358288 ~ 51424303 (+) False LOC110524569
XM_036979586.1 mRNA downstream 112953 51368597 ~ 51424303 (+) False LOC110524569
XM_036979593.1 mRNA downstream 112953 51368597 ~ 51424303 (+) False LOC110524569
XM_036979603.1 mRNA downstream 112953 51368597 ~ 51424303 (+) False LOC110524569
XM_036979606.1 mRNA downstream 116295 51371939 ~ 51424303 (+) False LOC110524569
TU60888 other upstream 1171355 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 2361439 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2872094 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 3230393 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3996453 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 194178 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 2410571 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 2732496 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 2789205 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 3465544 54721188 ~ 54721463 (+) True G59963

Expression Profile