RNA id: TCONS_00027412


Basic Information

Item Value
RNA id TCONS_00027412
length 902
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id XLOC_013620
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 45513964 ~ 45522215 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGGACATCCATCGTAGTCCTTAGAGGGACATTAAAGGACTGATTTCCACAGACAGAATCTCCTCTCCCTCCACGCGGGGAGTCATGCGAATGATCACGGTGCTGTCGGTGGTCTCGGACACCATGTCGTCTTCATCTAGAATTTGAGGCCGGGGAATGGGGGACCGGCGGTGCATGGGGGATGGTGGCGGCACTGGACCTGTGGAGCTCATGCCGGATATAGGGGTGGacggctgacagacagagagacagaaatGGTTTGTCGGAAAGTAGAGAGCCAGCTCTCAGAGTCACAAACACCGTCTTCCCATCAGGCCCTCCGACCACCTGCACCTCTCCAGCTTTGATGATGTACATCTCTCGGCCGATCTCTCCCTGACGCCAGAGACCCGAGCAGGACAAGAGTCAGTTCAAAACACTGGCAGATAAAAGCCTCTTTCATGGCATCTGTTTGATGTGACCTTTACTAAGACAAGCTTTACATGTTCTGGCCACACACTCACATTAGCTTTTCGAATGTTTTCGCATAGCAGCAGCCATAGGAGATGTTGTGATGAACTACTCACTTTTTCACAGACAAAGTCTCCTGGAAGATACACCACAGATTTCAACCTCTTGAGCATATCGAATATCATCTGTCGGTCACATCCCTGGAATCAACAAGTGGTGAAGTCAAAgtttttaaagctgttttaacAACGTAATATGAAGTTTTTAACTGGGTATTCAATGAGAAAAAAATTGAGTTGATCCAGTGGGAATTGACTGAAAGGTGAAAAGCGATCTCTGTTTGACAGCTGTTTGGAGAAGAGGCTTTCGGAGGCAGAGAAAGATATTACATTGTAGAACATATGTacattgtgtaaaatatatgctggataagttggcggttcattccgctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027411 lncRNA downstream 866953 44644152 ~ 44647011 (-) True XLOC_013616
TCONS_00027410 lncRNA downstream 879818 44631571 ~ 44634146 (-) True XLOC_013615
TCONS_00027409 lncRNA downstream 907181 44596794 ~ 44606783 (-) False XLOC_013613
TCONS_00027408 lncRNA downstream 907588 44596794 ~ 44606376 (-) False XLOC_013613
TCONS_00027407 lncRNA downstream 1255304 44257757 ~ 44258660 (-) True XLOC_013608
TCONS_00027413 lncRNA upstream 154838 45677053 ~ 45699011 (-) True XLOC_013623
TCONS_00026992 lncRNA upstream 216756 45738971 ~ 45740289 (-) False XLOC_013624
TCONS_00026993 lncRNA upstream 236788 45759003 ~ 45761847 (-) True XLOC_013624
TCONS_00027414 lncRNA upstream 361759 45883974 ~ 45886286 (-) False XLOC_013625
TCONS_00027415 lncRNA upstream 361759 45883974 ~ 45886790 (-) False XLOC_013625
TCONS_00026767 mRNA downstream 578790 44913422 ~ 44935174 (-) True XLOC_013619
TCONS_00026766 mRNA downstream 605485 44886381 ~ 44908479 (-) True XLOC_013618
TCONS_00026765 mRNA downstream 625589 44886077 ~ 44888375 (-) False XLOC_013618
TCONS_00026764 mRNA downstream 666109 44826173 ~ 44847855 (-) True XLOC_013617
TCONS_00026762 mRNA downstream 890289 44615591 ~ 44623675 (-) False XLOC_013614
TCONS_00026768 mRNA upstream 71870 45594085 ~ 45617146 (-) True XLOC_013621
TCONS_00026770 mRNA upstream 212082 45734297 ~ 45761868 (-) False XLOC_013624
TCONS_00026771 mRNA upstream 487866 46010081 ~ 46020138 (-) True XLOC_013628
TCONS_00026772 mRNA upstream 534692 46056907 ~ 46063773 (-) True XLOC_013629
TCONS_00026773 mRNA upstream 577008 46099223 ~ 46135927 (-) False XLOC_013630
TCONS_00026763 other downstream 890369 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 902712 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 1440536 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 4805440 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026696 other downstream 5898059 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026769 other upstream 97343 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026799 other upstream 1981562 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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