RNA id: XM_036961933.1


Basic Information

Item Value
RNA id XM_036961933.1
length 4950
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC110534084
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13981286 ~ 14027878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTAttagcttgagagagagagacaaactaaTTCAGCCAGTCAACCTGTTGATATTGACAGGTACTGATCTACAACGATAATGGCCATCCAGGACCCGGACCCGCTTTCTGAGAGACAACCCCAATGTGAAGATGAGACCATGGTTCCAGTACTAACTTCAAAAAAAGCCAGTGAATTACCAGTGAACGAAGTAACGTGTGTCCTGCAGGCTGACCTGCAGTACGGCCTGACCCACAGTGAGGTCACCCGTCGCCGTGCCTACCATGGCTGGAATGAGTTCGACATCAATGAGGAGGAGCCTCTCTGGAGGAAGTACATCTCCCAGttTAAGGATCCTCTCATCATGTTGCTACTGGCCTCTGCTGTCATCAGTGTGCTCATGCACCAGTTTGATGATGCCATCAGCATCACAGTGGCCATTATAATAGTGGTTACAGTTGCCTTTGTCCAGGAATACCGCTCCGAGAAGTCCCTTGAAGAGCTGGGAAAACTTGTGCCTCCAGAATGCCACTGtGTGAGGGAAGGACATCTGGAGCGCATGCTGGCTCGGGAGTTGGTCCCTGGAGacacggtctgtctctctgttgggGAGAGAGTCCCAGCTGATCTACGACTCTTTGAGgcaaCTGACCTATCAGTGGATGAGTCCAGTCTGACGGGAGAGACCACGCCCTGCTCCAAGTCCACGTCCCACCAGCCCACCAACAATGACATCACCTCCCGCAGCAATGTGGCCTTCATGGGAACCCTGGTGCGATGTGGCAAAGCCAAGGGTATCGTCATAGGCACAGGAGAAAATTCTGAATTTGGAGAGGTTTTTAAGATGATGCAAGCAGAGGAGGCCCCTAAAACACCTTTACAGAAAAGCATGGACCTTCTTGGAAAACAGCTCTCACTTTATTCCTTTGGAATCATAGGGGTGATCATGCTGGTTGGTTGGCTCCAGGGGAAACGCTTATTAGACATGTTCACCATCGGTGTCAGCCTGGCGGTGGCAGCCATCCCCGAGGGTCTACCCATCGTGGTGACGGTCACCTTGGCCCTCGGAGTGATGAGGATGGTCAAGAAGAGGGCAATTATCAAGAAGCTGCCCATCGTGGAGACACTTGGCTGCTGCAACGTCATCTGCTCAGACAAGACGGGGACTCTGACCAAGAACGAGATGACCGTCACTCACCTGTTCACCGCCGATGGACTTCATGTTGAGGTGACAGGCGTGGGTTACAACGGAGCTGGGGAGGTGTTACTGCACGGGGAGGAGATCCACGGCTTCTCAAACATCTCCGTCAGCAAGATTGTAGAGGCTGGTTGCATATGCAATGATGCTGTCATCAGGAACAACACCCTGATGGGACGCCCCACTGAGGGGGCCCTCATCGCCCTGGCCATGAagATGGGTCTAGAAGGGCAGCAGCAGGAGTATGTACGTCTGGAGGAAAACCCTTTCAGTTCAGAACAGAAGTGGATGGCCGTCCGCTGTGTCCACCGCACTCAGcagGACCAGCCAGGTGTGTATTACATGAAGGGGGCTTACGAGCAGGTCATCCGATTCTGTAGCTACTACCACAGCAAAGGTGCAACACTACCTCTCAACCACCAGCAGAGGGAGCTCTACCAGCAGCAGAAGAGTTACATGGGATCCTCAGGCCTCAGAGTTCTGGCTTTTGCGTCGGGTTCGGAAATGGGCAACCTGTCGTTCCTGGGCCTGGTGGGCATCATCGATCCGCCCAGGTCAGGGGTCAAAGAGGCTGTGGGCACGCTCATCAGCTCAGGAGTGGCCATCAAGATGATCACTGGAGACTCCCAGGAGACCGCTGTGTCCATAGCGGGCCGTCTGGGAATCTACACCAAGGGCTCCCAGTCTCTGTCTGGAGAGGAGGTGGACCAGATGGACCTCCAACAGCTGTCTCAGATGGTGCCCAGGATCGTGGTGTTCTACCGGGCCAGCCCCAGACACAAGCTGAAGATAGTCAAGTCTCTCCAGAACATTGGTGCTGTGGTGGCGATGACGGGTGATGGTGTGAATGATGCCGTAGCGCTGAAAGCAGCAGACATCGGCGTTGCCATGGGCCAGACTGGCACTGACGTTTGTAAAGAGGCagcagacatgatcctagtggaCGATGACTTTCAGACCATCTTGTCTGCCATCGAGGAAGGGAAAGGCATTTACAACAACATTAAAAACTTTGTCCGCTTCCAGCTAAGCACGAGCATTGCAGCGCTCACCCTCATCTCCCTGGCAACGCTGATGAACTTCCCCAACCCTCTGAACGCCATGCAGATCCTGTGGATCAACATCATCATGGACGGACCTCCCGCTCAGAGTCTGGGAGTGGAGCCAGTGGATAAGGATGTCATACGGAAGCCTCCGAGGAATGTGCAGGACAGCATCCTCACACGCAGTCTGTTAGTCAAGGTGCTGGTGTCGGCACTCGTCATCGTATGCGGCACCCTGTTCGTCTTCTGGAGAGAGctgcaGGACAATCTGATCACTCCCAGAGACACCACCATGACCTTCACCTGTTTTGTGTTCTTCGACATGTTCAACGCCCTCAGCTCACGCTCACAGACTCGTATGGTCCATGAGATGGGCCTGTGCAGTAACAAGATGTTCTGCTACGCGGTGCTGGGTTCCATCATGGGCCAGCTGGCGGTCATCTACTTCCCTCCACTGCAGAGTGTCTTCCAGACAGAGAGCCTCAGCATCTTTGACCTGCTGTTCCTGGTGGGCCTCACGTCCTCTGTCTGCATGGTCTCTGAGGCCATAAAgtgggtggagaggtggagagcagtgagggagaggagaaccaCAGTGTCTGAAGAAGACTCCTTCCACGATGTATGACGCACATTGCGTTCTGTGTGACAGAGtagataggggagaggagggggcggGGCTGGGTTGTTTGTGGGTGGGGGGGTACATGTAGATGGGATGCAATGGTTATTTGGTCTGAACACAGGGACTGGAGAGAGAACTCAAACAGTTGCTGTCCCTCGCTGGTATTCACTGTTCAGTCATGGATTGGAAGTGGGCGAAGAGGATCTCAACCTTACAGTGCCCCCctgccctccacctctcccctgcaAGAAGCATTGGCGTGCTGCTTTCAGACTGTACCATCCTCCAGGAACTCAGGAGGGGATTTATTTATGAGACATTGTAACTGTTGTTCATGTGGCAACTATTCATGTCTATGGTGTCGTGATCTGAGAGGACAATGTTACTGCTCGTAGATCAACTACTCACGTCTAGGTTTTAAGACCAATTAAGGACAGCATAATTGTTTGTAGAGCAACTATTCATGTCTTGGGGTTCATGAACATAAATGGAATTTTGTAACTGTTCTTATTCGTCATCACCTTGCTTCGAGTGCAGGTAGCTAACCATAGCTTTGTAGAAGTCTAGAGATGTTACTTTCATGCATTCCAGCTTTTCATGCTAGTAGCAATCTCACCATCAACTTCCAACCAATTTAGGATTGATAATTGTGAGCATACTTTTGTTTTGGTATAGACTTTAGGAAGAGTTGACCACTAAACCGTGTTATTTTGGTGGATGAATATAATACATTTTCTTCAGAAGATACGTTTGGTTTGGTTTTTCTCACATATTAGGGCTGATGGCCTTCATTTGGCGTCATTTAATTCCACTCTGGCTATCTATTTAGTTGCCCCTGGAGACATTCTGTGTTTTGGACCATCACTCAGCAGTTTATTTTCCCAGTGATCAAGCAGTACTATACAGTTAATTCTATCCCAGTCCCCACCCTCCCAGCCACGGTCTGCCTCCCCAAAATCTTTCACTTGCCCTGTATCAAACCTACATTATTTTTTCCATTTAGGGAATTAACTGTTTGCCTTGAATGAAAGGCACAGAGGTATTTGGTCCAGTGCTGTCAAACATGTtatttttcctgtgttttatatatattttcacactatgaggttggaatagtaCTGTGAAATGATGATTAGTGCTCTTTTAGTGTCAGAGCTGTTTGAAAAATgccagcctgttttggtggaatggagttttggcctgcctgatgACATGCCAATAATAGctggttttcagttttcccctccccactcagccACTCCTAGACAGTCATAGCAACATTTTAGCTTGAGGAAATTCCTCTTGCTAGGAAGCTATTTTAGTTTGTTTTTGACTGCTTTTTGATTGAAGAAGGTCACTTTAAGGTACTtatttgttacccagaaatgatttgatattgagataaaaaaaaatgggCCTTTTAATATTCTGCCTCTATTTTACACACTGTAAATTAAGTGCAAATATTTATCTCCATGACAACCATTTACTGTACATGCACTGTTCATATACATTTTGCTTGTGTCTTGGGTCAAAAGTGGCCATTTTAAGCACATTTTTCTCTTCGTGCTCTTTCCAGAAGCCTCCGAGGCCTTGTTTTGGTACAGCTAGACATACCTGGGTTTTATTTCACAATGCAGAATCACTCAATTAACAAGCTTGTTTTGATAATCATTTACATTAAATATAATTGAATTCCCAGGTTTATAAAGGCAGGTTCAGTTGATAATGGGTTATTTGAGTCATACCCATTCCAGGTTTATTTCTTTATGAACCAGGAGATGGAGTTGTTTCAGCATTTTTAGGACCGGGAGCTAATTCATTGATGTTGCTTTCCAAATGAGTTTTTGTCTGTGCTATGGATGGCAACAGAAGTCCTCTACCTACCGCAGCACCTAGCGGGTACAGGCTAACATCGCCAGCTCTTTCTATTACACGTTCTTTATTTTACAAGAGGTTATACTCTCTGCTTTGGTCCATTTGACAGGCCAAATCAGCTACAattattttaattgtttatttatgaTTTGTTGTGTGTGTTGCACAGCTGAAGACAGTACTCTGTTGTGATGGTATGAGAATAAATCTGTACATtaatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132558 lncRNA downstream 61561 13919119 ~ 13919725 (-) True G115414
TU132080 lncRNA downstream 175408 13805665 ~ 13805878 (-) True G115041
TU132070 lncRNA downstream 184765 13796216 ~ 13796521 (-) True G115031
TU132069 lncRNA downstream 185227 13795775 ~ 13796059 (-) True G115030
TU132060 lncRNA downstream 195707 13785353 ~ 13785579 (-) True G115021
TU132605 lncRNA upstream 14168 14031966 ~ 14033473 (-) True G115450
TU132624 lncRNA upstream 19563 14037361 ~ 14119171 (-) True G115460
TU132615 lncRNA upstream 37360 14055158 ~ 14056831 (-) False LOC110535427
TU132651 lncRNA upstream 91709 14109507 ~ 14113517 (-) False G115484
TU132654 lncRNA upstream 91709 14109507 ~ 14144417 (-) False G115484
XM_021620220.2 mRNA downstream 21032 13957030 ~ 13960254 (-) True LOC110535305
XM_036962145.1 mRNA downstream 43747 13935838 ~ 13937539 (-) True LOC110535382
XM_036962150.1 mRNA downstream 43820 13935838 ~ 13937466 (-) False LOC110535382
XM_036962206.1 mRNA downstream 46010 13926181 ~ 13935276 (-) True LOC110534076
XM_036962016.1 mRNA downstream 66910 13828279 ~ 13914376 (-) True LOC110535394
XM_036961808.1 mRNA upstream 28542 14046340 ~ 14080800 (-) False LOC110535427
XM_036961811.1 mRNA upstream 28542 14046340 ~ 14080800 (-) False LOC110535427
XM_036961802.1 mRNA upstream 137868 14155666 ~ 14183944 (-) False LOC110535417
XM_036961800.1 mRNA upstream 137868 14155666 ~ 14187260 (-) False LOC110535417
XM_036961795.1 mRNA upstream 137868 14155666 ~ 14187261 (-) True LOC110535417
TU132581 other downstream 4725 13962185 ~ 13976561 (-) True G115431
TU131953 other downstream 319695 13653902 ~ 13661591 (-) True LOC118937748
TU131946 other downstream 398680 13574535 ~ 13582606 (-) True G114928
TU131917 other downstream 481003 13494448 ~ 13500283 (-) True LOC110534058
TU131790 other downstream 648780 13330748 ~ 13332506 (-) True G114812
TU132617 other upstream 39744 14057542 ~ 14060958 (-) True LOC110535427
TU132669 other upstream 206061 14223859 ~ 14224919 (-) True G115492
TU132791 other upstream 391968 14409766 ~ 14412176 (-) True LOC110535605
TU132828 other upstream 508270 14526068 ~ 14526520 (-) True tmem245
TU132893 other upstream 537461 14555259 ~ 14556168 (-) True alg2

Expression Profile