RNA id: XM_021564012.2


Basic Information

Item Value
RNA id XM_021564012.2
length 9966
RNA type mRNA
GC content 0.51
exon number 44
gene id si:ch211-272n13.3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45278394 ~ 45394968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAactatgtcaacaaacatgggtATTCATGATTTTGTACAGTAGGTGGCGTTGTTTACAACTTTCAGTTGGCTGCGGTCCGCCAACCCGATCCCGAAGAAGAAGCAGCTGGCAGCAGGAGCGATCAACAGGGATGGGAAAGACGCATGCTGTGGTGATCCTCCGGCGGCACCTCAGTGTCAGGTAGTGAAGGCCAAAGGCAATGCAGTCTGCTAACTGTCATCTGGGCATCCACCATATACAATGAAGAAGATATTCAACTTCACCAAGAAAAAGAAAGGATTCTCACCTAACACCTCAGACACTGGGAGTGTGCTGTCTGTGGGCTATGACTTGAAGGAGAAGGACCTTGGAAAGGTACACAAGGCTGCTTATGGGGGTGACTTGGCCAAACTGAAGCATCTGGCCAAGAAGAATGACATCAATCAGCTTGATAAGGAGAACAGAACAGCACTTCACATTGCCTGTGCCAATGGACATACAGATGTGGTCCAGTTCCTGGTTGAGAGCAAAGCCAAGCTCAACCTATGCGACAATCAAAACAGATCCCCGTTGATGAAGGCAGTGCAGTGCCAGCAGGAACGCTGCGTGGCCACGCTGCTGGAGCATGATGCCGAACCTAATCTGGTGGACATCAACGGCAACACGGCCCTGCACCTGGCCTCCTGCATACCTGCCTTCTCCACCGCTATGCTGCTGCTGGAGCACGAGGCCAATGTTAACGCCCAGAACAAGGAGGGATACTCCCCTCTGACTATGGCAGTGAAGGAGAATCATGCCGAGATGGCCGAGTTCCTCCTCAAGGAGGGGGCCGACGTCAACACTAAGGACCAGGGACACAGGTCCCCATTGATGATCGCTGCTTGCAATGGACAAATCAGTATGGTGCGACTACTCCTGCAGTACGACGCAGACATCACCTTAAAGGACAATAATGGATGGTCGTCCGATGACTATGCTGTGATGAACGGACACCACGCTTGTTCCCATCTCATTATTGAGCATGGCACCAAGAGGAAGTCCATGCCGTCTCCCGCCCACGCCCCTGCCAAAAAGAAGCGAGCTTCCATGTTGTGCAGCCCTTCCGAAGAAGCAGGCTTCTCTCTGGGGGGACCAGCAACTGACAAAGATGATGTTGAAGACAATTCGCAAACGGAGTCAATAAGTCGGGCGTCAAAAAGTGCGGCAGACTATTCCTGGCCATCCTCAGATGAAGAGGACGAATTGGATATAACCCAAAAGAAACATCCAAAGCTAAACCTAAAGAATCTGATGAATGCCTCCAAAAAGGGAAAGAATGACGCTGTAACCGATGTCGAAAAGCCATGGAGCGGCCCTGAGGCCAAGCGTGAGAGCGAGAACCAAGTCCAGAGAAATCCATCCCTCCCCAAGGCTTTCCCACCCAGCAGTGCCCCCCAGCACCTagtctccccctcaccctctgcCTCCTTTACCTCCAAACCTGCCCAGATGATCTCTACCTGTCTCCAGAGTTCCAGAAAGGAAAAAGATTCCACAGAGGATGAAGAAGATTATGATGAAGACAGAGGTGGTGATGAAGAAGATGAGGAAGAGAAAAGCTTCGAGGagatgggaaagacaaaatatcagacagaagaggagaaagaTGATTCCCTTGTTGATGATTCACCAGTCCCTGGAAGTCAAGACACCTCCAAAGAAAAACAAAGAGATTTCCTTTCTGAGTTGGGTTTGGAGAAGGGAGATGATGAGGAAGACTCATGGGACACTGAGTCTGGCTCTGTCAGTCCCAGAAAACATCATGGCCGAGATCCTGCAAAGGTGCCACATGTTTCCATTATTTCAGGGGAGAACAAAGAAGTTTTAAGAAATTATGATAATGATGCCGACAATGACAATGTCCCAGAAAAGCCAGAGAAAATCAAAAGGGAAACTCTGTCGATCTTGACCAAGCTTGAACTGTCCAAAAAAGATGCTGACAAAAAGACTGACATAATGGAGGAGCTTGGGTTGGGTGATGTTGATGATCTTGAAGATGCCTCTGATTGGGACACGGCCAGCACCTCCAGCAGGAGAACCCTCCCCGGCCACGGAGTGCCTTCCCCCGGTGGCGAGGAGCTGAGGGAGGAGGCCTCTTCCCGATCCCCCGTCCCTCTGCCAGCTGTCCAGGAGCAGGAGCCAGATGCATTAATAGCGGAGAGGAGCGGTCCTGAGGAGAAGAGACACTTTCTTTCGGAGAGACCCCTGCCATTGGCCAGCCCGCGCTCCCTTACCCCTCAAACCCAACCCCAGCCCTGTGCTCGGAAGATGCTGCTCCAGAGAACAGAGAGTGAGGAAGACTTTAATTGGGATTCCAACCACGTGAATACCTCCACCCCCAGCCCAGTCAGGACTGGGAAGCAACTACCAAACGTAACAGAGACCGTCGCAGTGTTGAAACCTAATAACCCTCTGCGTGAGCCCTCGCCAGTAAAGCAAGAGAGCGAAAGCAGTCCAGAGCCTGAGGAGCAGACACAGGAGGAGAAAGACGTTGCATCAGAGTTAGACGTGGGCGAAGACAAGACAAAGGCCAACATGGAGGTGCTGCAAAAATCAAGTGTCTCACGGGTTGCTGGAGGATCAATGAGCAGGCGATGTGAACGTGAACTagacaaagaagaagaggagaaaccTGAGACCAGTTTAGGACACCCTAAAGTGTCACGCAGTGGAAATGGAGCAACAGACAGTGAACATCAGCTCAGAGCAACAGACCGTATTACCCAAAGACACGGGTCCAAAAGTCCAAAGAGGGCCCTGGAGGACCAACTACATCAACAGcagaagaaggaggaggggagagctgTATCTAACGAGGCCACCTTACAGTGTCCCTTTCTGGGGGGAGCCAGGCATGGCCGAGCCCCCCAGACAGCTAACCATGTTAACGCAGGAGACCCCCTCTCAGTGTTTGACGATAGTACTTTAAGTGAAGTGTCGGACGATCATGGAAGGGCTCTATCTGCATGGCATCAGAAAGACAAGACTGCTGGTGAGATTGAGATGGCGGAGGACTTTGATGAGCTCACACAGTCATCGGACACGGCCACATCTGACCTCGAAGACCCCACCTCTGGCTACCGTCACGCCTCTTTTCTCATCAAACAGCTCGATTCTGCCACTTTAGaCTCTGTGAGCATCGTGAAGCTCCAGAACATGTTCCACGAGTATGAGCGCACAATCCAGAGGGAGCGGGGCCGCCATGGGCACCTCTCTGACAAGGTGAGCCAGCTGGAGGTCGAGAAGCGCGAGCTGATGGCCTCACTGGAGGAAAGCCGGGACAGCAAGCAGGCCCTGGATCACCGGCAGCTTGAGCTGGACACGGACCTCAACAACTTTAAGTTCCAGCTGAAGCAGGAGCAGGAGAAGCACCGGAACGCCTCCATGCTGTATGACAAGAACCGGGAGATGCTgcggaggaaggaggaggagctaCGGGCCGAGGCAGAGGAGAAGCACAAGGTGGAACTGGCCATGAGGAACCTGGAGCTGGAGATGAGGGCCATCCTTAACAACATGAAACAGTCGGAGGAGGACCGCAGCGAGACCCATAGGCTGCTGACCCAGGAGCGAGGTGCCCGAGCTTTGTCGGAGACCCTCCTCAACAATCACCTCCGCAAGCAGCAGCAGAtcgaggaggagaacaggaggaccaTCAGTAAGAGCAACGAGGCCCTGTCCCAGTTGACGGAGGCCACTGACCGAGAGAGGGAGCTGCTGCAACAGAGCTCTGTGCTCCAGGACGAGTTGAGCTCCCTGAGAGCTGAGCTGGAGCGCTCCTGCTCCCACAGTCGCCAGGAGGAGTCCCGCCGCTCCGAGAAGAGCGAGGCTTTGAGGGAGCGCCTAGAGGATGCCCGGCGCGACCTCAAACTCAACGAGGAGGCGCTGGCCCAGACAGTCTACCAGTACACCAGCCAGGTGACCGCCGTCAAGGCCGAACTGGCTGTGGCTTCCACACGGCTGGAGCACGAGCGCCAGGTGAGGGAGCAGCTGGAAGCCGAAGGTGAGTCAGCGAGGACGCGGCTGACTGGCGCTCTTCAGGAGGCAGAGAGATGCCAGGTGGCACGCGCTAACGCCGAAAGAGCTCTTCATCGCGAGCGTGAGGGGCACCAGCGTGCCCAGGACAAGCTTACGGGCGAGGCAGCGAACAAACGCGAGGCGGTGGGTGGGCTGTCGCAGAAACTCGCTAAGGCAGAATCACGTGCAAACGGCCTCGAAAATGAGGTGCACCGCGTCACAATGTCGCTTGCCGAGATGGAGCATGTGGTCGCCACGCTGCAGAGGGACAAGGAGCAAATAGGGGGGCGAGTGAAGGAGCTTGAGGCAGCTCTACAGACGGAGAGGGAGCAGGCTGGGAGAGTGTGCGCCCGGCAGGAGACGCTGCAGGAGAGGCTGGCGGCGGCACAGAGCGAGGCCATGCTGCTGAGGCAACAGCTGGAGGAGGCCCAGAACAAAGGGATGGCGAAGGAGAAGGCGGTGACGGACGCCCAGGAGCGCTTTGGCGACCTGCTGGCTAAGCTGCGCTCGGACGGGGAGGAGCGTGTGCAgctggtagaggagaggagcaaggAGCTGGCCACCAAGGCTGCCGACCTCCGCGACCAGGTCTACaagctggaggaggagaagaacgaCAGAGAGACCAGTTTGAGGCAGCTGCAGCAAGAACTTGCCGACTCACTGAAGAAGCTGTCAATGAGCGAGGCTTCCCTGGAGGTGAACACACGCTACCGCAATgacctggaggaggagaaggcgCGACTGCTCAAGGACATGGACCGCCTTAAGGGGAAGCTGGAGGAGAGCGAGGACCAGTACGTTCAGGCGGAGCGGCGCATCAAAGCTCTGAAGAGCAGTCTAGATGAGAAGGAGCGAGAGGTGGTCGCCGCCTCTCAGAAACTGCAGGAGGTGCTGTCTGCCTTTGCAGGCTCAGACACCACCATTAAACAGCTGGAGGAGGCAGTGCAGAGATTGGAGATTGAGAATGCCAGGCTGGAGGCAGCAGCAAAGCAGCAGACCAACAAGATTGAGGCACTGCAGAAAGGAGTCCAAGACTCTGCCATGCCATCTGACTCTGCAGCAGGAGGAGGGGTCAGGAACCGTCTGGAGGATTTGGTGACTGGCCTGCAGTGCAGCAAGATGACCCTGGAGGACCAGCTCAGTCAGGAGGTGCAGAAGCAAAGCATGCTGTCCCATAACGCCCAGGACTCCCATGCGCTGTGGGAGGAGGAGCTGAAGAGCCGCTCCAAGCTGGGTCTGCGTCTGGCTgagctggagaaggagaaaggagagctCAGCAGCCAGATGGAGTTAGAGAAGAAGAAGGCCAAGAAGATAGGGGAGCAGAAAAAGTCAGTGGACACCAGATTGGACCAGGAGATGAAGAGAAACACAGAACTACAGAAAGAAATGTACAGGCTGCGGACACTGGTGAAGACGGCTAAGAAGAAGCTGCGGGAGCAGGACGGTGCCGGGGCTGAGTTTGGATCGCCAATGAGCAGCATGAGAGGGGAGATGGGCCACAGACAGACTGAGGCTGACATCAGCAGGATGAAGGACAAGGTGGATGACCTGTCGGTGCAGCTGGAGAAGGAAGTGTCTCGCTGCAGCCAGCTGGAGAGGGTCAACGGGGAGCTCAAGGAGAAACTGACCTCCTTGAAGGGCCTGGGCCGCAGCAACGAGCGGCTCGAGCGTAGCAAGAGGCacctggaggaggagTTGTTGGGCCTGCGGCGGCAGGTGGAGTCGGGGGTGATGGACCAGACCCTGGTGGATCAGTACCGACAAGACGCAGAGGAGAGGGCGCGCCAGGAGATCAGACAGAAACTGGAGGAGGTCAACCTATTCCTACAGACCCAGGCGGCGTCCCAGGAAGCGTTGGAGCAGATCAAGGCAGCAAACGAGGCCAGCTTGCGCTCCACGCTGGAGCAGCGTATCCGGGAGCTGGAGGGCGAGCTGGGCAGAGCGCACTCCACACAGCACGACAGCATGAGCCTGCGAGACTCCACCCGCACAGAGCTGGATCGCTACCGGGAGCTCTACACTGAGGAGCTGCGTCTCCGCAAGGCCCTGGCTGTCAAACTAGAGAGGTCCAATGAGCGGCTGGCGGAGGCCAACACCAAGCTGATGAGCGAGCGCCACCGCAGCAAGTCCCTGATAGCCAGCAGCATTGTCAACGGCAGCCTGGGCGGACCTCTGGACATGGGCTCCCTGGGGCCGGTGGGGGCCTACGGGGCAACGCTGGGGCCCCTCAACAGGAGCCTGGGAGGGCCTCTCCTTAGCCCCCTGGGGGATGGGGGTCAGAGCAGCAGGGTGGAGGCTTACCTGGCTAAGATGCAGAATGAATTGGAGAGAAACATATCAAAGGAGTTGGACCATGCAACAGCAGAGCTTGAGTGCTCTGCCCGGATGTCTCCGGTGGGCTCTGCCTCGGGCTCCCCTACTAGCCTGGGTTGGGGTCTCAGTGTGGTGGAGGACCCGGTCAGCAGGGCCACACAGCAGTACCTGGAAGTGCTCAAGAAAAACTATATGATTTGACCAACCCATAGCAGGGCCAGGCAGCTTCTGGGCTACCCAAAGGGAGCCACAACTGTCCGCTTTACCATGACCTTGGTGGTGTTTATTAGGGCACGCGGTGGGAAACGTTTTGCAATCGAAGGCAAAAATGACATTTTTAGGTCCAGGGTATTCCTTCCGTTTCATTCTGTTTTCTCCCGTTTGGTGCTCTAATGAACATCACCCTGGGCCTCATCAATGCATGCTTATATAAAAAGGACATGCACATTGAGAAAAACACTAAAGGGTAAAGCCACTCCACTATAACAcattccccccaaaaaatgtttactCTTTATTCTACGTCTTTTAAGAAAGGAAACAGACGTTTCACATtgcacttacagtgcattcgaaaagtattcagaccccttgactttttctacattttgttaaattacaggcttattctaaaatggattgtatcgatttttttccccccctcatcaatctacacacaatgccccatcaTGACAAACCAACAACAGATTTTTAGATATGTTTGCATATGTgttaaaaatgtaaaactgaaatatcacatttacataagtattcagaccctttagtcggtacttgttgaagcacctttggcagcgattatggCCTCGAATCTtgtttggtatgacgctacaagcttggcatacctgtatttggggagtttcttccattcttctctgcagaacctctgaagctctgtcagattggatggggagtgtcgctgcacagctattttcaggtttctccagagatgttagatcgggttcaagtccgggctctggctgggccattcaaggataTATCTAGAGAATTGTCCCAAAGCCAGTCCTGCGTTgtcgttgtactgttggaaggtgaaccttcgccccagtctgaggtcctgagcgctctggaccaggttttcatcaaggatctcgctgcaCTTTGCTCCAttcgtctttccctcgatcctgactagtctaccagtccctgccgctgaaaaacatccccactgcatgatgctgccaccaccatgcttcaccatagggatgttgccaggtttcctccagacatgacacttggtattcaggccaaagatttaaATCTTGGTTTGATCAAACTAGATATTCTTGTTTCCTTTCAgtgcctttcggcaaactccaagcaggctgtcatgtgcctttttctgaggagtggcttccgtctggccactctaccattaaaaacctgattggtggagggctgcaaagatggttgtccttctggaagattttcctatctccacagaggaacactgtcagagtgaccatcaggttcttggtcacctccctgaccaaggcccttctcgccTGATTCCTCAATTTGGCTGGACGACCAGCTccaggaagagccttggtggtttcaaacttcttccatttaataatgatggaggtcactgtgttcttggttatggtcaatgctgcagaaatgttttggtaaccttccccagatctgtgccttgacgcAATCCTGCTTCGGAGCTCAACTGACATTTCGACCTCATGAcatgttttttgctctgacatgcactgtcaactgtgggacttatatagacaggtgtgtacctttacaaatcatgtccaatcaatttaatttaccacaggtggactccagttaagttgtagaatcatctcaaggatggtcattGGAAACAAggtacacctgagctcaatttcgagtctcatagcaaagggtcttacgtaaataagttatttcagttttttatttttcatacatttgcaaacatttctcaacttgttttcactttgtcattattgggtattgtgtgtagattgagatgttttatttaaaccattttagaaggctataacctaacaaaatgttagtcaagtggtctgaatactttcggaatgtACTGTATACACGAGAAAGATGGCATGATATTTTTTTTCAAAGccatatttttttacatatttgtTATTAACCTCCTGGAGACAATGTCTGCGCCCCTTTGGACATATAATCTAAACATCTTCATAAAAATATCTGTTTTTTTTCATGGGCTACTTCTCAATCCAACATTCACCGATGTCAGCCTTCATCATCTACGGTGAAAGATGGCAGCgctacagctgtgtttgtcaaaccatgagacatccctattatgacccctctatgtaAAGGTGAGACTCTAACGAAAACATATATGATTTGCTCTGAGATGCCCACAtacctcacaagactcgtctgaagacTCACCCGGTACCACAAGACTCGCCCGAAGACTCACCCGGTACCACAAGACTCGCCCAGTAGCAGTTTAAAAAATGCCTTCTACACCACTTGACaactgaggagtggaaaaacattgcatGGAACATGACAGTGAGTAGagtttacttgagtggcctgGCTCAGTCCCCAGACTGAGCATCTTAGAGCACCCAATAGAGCATCTTTCGGATGAGATGGAACAGGCTGTTGGGCAGTATGAATGTATCGCCGTCCAATCTGCAGCTACTACGTGATTCCGTCGcatcagcatggaccaacatccctttGAAGAATACCCTAAATAATTCggtctgttctggaggcaaagggcggtccgacccggtactagatggatGTACCTAAAATAAACTGTCCAGTGAGTATATGGAAGTAGTTTAGTGTgtaaaaaaaggggttaaatatttGCTGAAAGATATTATAATAATCTTATCTCATaaataggacagacacttcaaaacaagcttcctttaaaaaatgttttacctttttCCATATacaaatctgttattcaatgcgtttcaaTGGGCTAGTAGCagacgtgtgtgtatatatagacatgtatacatatatacatacatataagtTCTTAAGTATTGTTACTCTTGTATGATCTGTTTTTTTCTATGGTTCAGTCCTTTTCAGTACAGTGTGTATACACTATAGGTTCCTGCGTACAGATTGTCTTGAAAATTGTTTGCCATTTACTTTATGGTAttgatttattggatattttataGTATTGGATGTATGTACCATGAGTAACATTACCAAGATATCACTTTTTTTGGTATGTGCCGTGTAATGGTTCAATATGTTTTttcctgtttttttgttgttgttgttgtaatgcaCAACATATACTTGAATGAGACAAACGAGGATATTCTGTAGTTAAACAGGGTACCCATATTTTGTTGTACCTCGTTACATTAGTTTTTGTTTGATCTTAGTTACAAAAAATATTACATGGGAGAAAAAAATTAACATTTCAGTATTTTTTTAAGGTCAACAGttgctataaaaaaaatatatttaaggaAAAAGAGAATAGCCATCTGAACCcttgtacagtacattacagaaGATCTGTAAATTTATGAATAAAAGTCTACAAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170083 lncRNA downstream 9630 45284030 ~ 45284241 (-) True G148287
TU170078 lncRNA downstream 20169 45273436 ~ 45273702 (-) True G148282
TU169858 lncRNA downstream 36471 45257129 ~ 45257400 (-) True G148104
TU169756 lncRNA downstream 119144 45174516 ~ 45174727 (-) True G148015
TU169755 lncRNA downstream 119942 45173690 ~ 45173929 (-) True G148014
TU170044 lncRNA upstream 27652 45422620 ~ 45443753 (-) True G148275
TU170163 lncRNA upstream 71188 45466156 ~ 45468794 (-) True G148366
TU170199 lncRNA upstream 119634 45514602 ~ 45520010 (-) False G148399
TU170200 lncRNA upstream 119634 45514602 ~ 45518511 (-) True G148399
TU171293 lncRNA upstream 320799 45715767 ~ 45715997 (-) True G149430
XM_036933947.1 mRNA downstream 122015 45171198 ~ 45171856 (-) True LOC118936755
XM_036949640.1 mRNA downstream 125611 45134476 ~ 45168260 (-) False LOC110490531
XM_036949646.1 mRNA downstream 125613 45134476 ~ 45168258 (-) False LOC110490531
LOC110501628 mRNA downstream 169027 45123713 ~ 45124844 (-) True LOC110501628
XM_036949622.1 mRNA downstream 220731 44760902 ~ 45073140 (-) True LOC110501618
XM_021564046.2 mRNA upstream 74274 45469242 ~ 45491918 (-) True ldha
XM_021564060.2 mRNA upstream 744288 46139256 ~ 46289343 (-) True abtb2b
XM_036949745.1 mRNA upstream 923589 46318557 ~ 46491353 (-) False b4galnt4a
XM_021564073.2 mRNA upstream 923589 46318557 ~ 46756003 (-) True b4galnt4a
XR_005036958.1 mRNA upstream 1194918 46589886 ~ 46592723 (-) True LOC118940396
TU169728 other downstream 125772 45134568 ~ 45168099 (-) True LOC110490531
TU169520 other downstream 430312 44863085 ~ 44863559 (-) True G147800
TU168984 other downstream 715116 44571948 ~ 44578755 (-) False LOC110490449
TU172175 other upstream 1449212 46844180 ~ 46921593 (-) False tmem86a
TU172204 other upstream 1451184 46846152 ~ 46849616 (-) True G150290
TU172551 other upstream 1569766 46964734 ~ 46993665 (-) True G150618
TU172611 other upstream 1799925 47194893 ~ 47205433 (-) False G150675
TU173467 other upstream 2455817 47850785 ~ 47851348 (-) True G151474

Expression Profile