RNA id: TCONS_00029946


Basic Information

Item Value
RNA id TCONS_00029946
length 1487
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id XLOC_014114
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 29459117 ~ 29607003 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTACTTTCATATCATATACCACTCCGCCATCTTTCGTTGTTGGTAAAAATCATTAACGCCACCCTGCGTGAATGTTAAAAAGGTTCATGTCAGTTTTAATGTCCTCGTTAACCATGCTGTTGTAGTGAACAAAACGTTTAATGGATGGCCATCAAAGTAATCTCCAGTTGAGCTTCATAAGCACAAAAACATATTTCAACGAACAACGAACCGataTGCAGTggcatccacaagatggcaacagagaccaaATAATAAGCGGTTAGAGGAGAAAAAAACCCAGtgaaattttaaactacagctgatctaatcattataaaactgcttttccgctgttaccagtttgtcggcggacttgagaccaAGTGGCGTTGACCGCGACAATGGGGTTCGAATTTGGTGAAGATCAGTTACAGGAAAAAAGgcaggtgtgttgaggcaagttgttgGAGCCAAGCTCTGCAGGGTCATGTGccttccaggaccaagattggtgacccctgctctaagGTGACGGTGGATGCAATGTGACTCCTGATTAGTTGCTCTGGCAACCTCAGGGTACGTTCGCTGGTGGCCATGGCAACGGCTGAAGCATGGCGATGGAGCCCGGcagattatttaaatttaacaggAATGAGAATACGGAGGCGGATTGGCAAACCACAACGTCATCACAGAGAAGATGTCGCTTGTCAATAAAACTGAAGCATAActggtgtgtgtatatctgtaATTTTTATTCTGCAACAAACAGATTGTTAGGACCCTATTTAGACTGGGAGAGACAggagtagagagagagagagagagaagggggggggggggtggtctTGGTTAGTAGCTCCAGGCAGCAAGACCTCCAAGCAGTTTTCCATTATACTTAATTCCATAGAAACCAAACCCAGAAAGACAGGAAACATGGAGAGCAAAGAAAGCATTGGGTGGTTATGTGAGGGAATGCACATGGGAATGGAGGAATGTGAACGTGTTCTGTTACCACTGCCGTGTTTCCCTCAGTAGGAATGTATATGTGCCTTTTAAATCCTTTAGAAATCTGCCATACTTCCTTTGTTTAAGTATGACACCATACAAAGCATTAATACTACAATATTTAGGGTCAGGGGTTCCATTTAGGTATATACTTCTAAATCTATACTGTGTGAATGTTCTGCTTGACTGAGGTATTGACATCGCTTCTTGGCTCTTGCGTCAGTCGGTCTTCAAAATCATACATCATCCAGTCTGAGGCTTGACTTACAGTAGGGATTGAAATCAGAGAACAACATACAAATTCATGAAATCTGAGGTCCCTAATTAGTCCTGTTTGAGGTTATTGTGATATGTGTAAAAAAGCAGTATTTTAAGCATATTGTATGAGTCAACGCATTCTAAAGCGATGTATAAATAtgagatatttgaaaaagaacactGATCGCAAAATATTAGATCACGATTCTgaacaaaacaacaaattaattaagtc

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029722 lncRNA upstream 351423 29105935 ~ 29107694 (+) True XLOC_014110
TCONS_00029942 lncRNA upstream 634727 28814591 ~ 28824390 (+) False XLOC_014109
TCONS_00029943 lncRNA upstream 634727 28814619 ~ 28824390 (+) True XLOC_014109
TCONS_00028121 lncRNA upstream 634803 28803429 ~ 28824314 (+) False XLOC_014109
TCONS_00028120 lncRNA upstream 640582 28803429 ~ 28818535 (+) False XLOC_014109
TCONS_00029952 lncRNA downstream 160096 29746138 ~ 29751743 (+) False XLOC_014115
TCONS_00029953 lncRNA downstream 164053 29750095 ~ 29751743 (+) True XLOC_014115
TCONS_00028130 lncRNA downstream 222671 29808713 ~ 29814838 (+) False XLOC_014117
TCONS_00029954 lncRNA downstream 222671 29808713 ~ 29815732 (+) False XLOC_014117
TCONS_00028132 lncRNA downstream 228740 29814782 ~ 29815732 (+) True XLOC_014117
TCONS_00028125 mRNA upstream 95338 29337789 ~ 29363779 (+) True XLOC_014113
TCONS_00028124 mRNA upstream 125250 29303847 ~ 29333867 (+) True XLOC_014112
TCONS_00028116 mRNA upstream 1124962 28291440 ~ 28334155 (+) False XLOC_014108
TCONS_00028113 mRNA upstream 1125277 28291062 ~ 28333840 (+) False XLOC_014108
TCONS_00028126 mRNA downstream 212022 29798064 ~ 29800205 (+) False XLOC_014116
TCONS_00028127 mRNA downstream 212064 29798106 ~ 29800812 (+) True XLOC_014116
TCONS_00028128 mRNA downstream 222429 29808471 ~ 29821601 (+) False XLOC_014117
TCONS_00028129 mRNA downstream 222657 29808699 ~ 29818648 (+) False XLOC_014117
TCONS_00028131 mRNA downstream 222680 29808722 ~ 29815366 (+) False XLOC_014117
TCONS_00028123 other upstream 138234 29303847 ~ 29320883 (+) False XLOC_014112
TCONS_00028122 other upstream 255860 29203142 ~ 29203257 (+) True XLOC_014111
TCONS_00028118 other upstream 1124953 28331227 ~ 28334164 (+) True XLOC_014108
TCONS_00028117 other upstream 1128020 28321679 ~ 28331097 (+) False XLOC_014108
TCONS_00028114 other upstream 1143164 28291376 ~ 28315953 (+) False XLOC_014108
TCONS_00028134 other downstream 268207 29854249 ~ 29860206 (+) False XLOC_014118
TCONS_00028136 other downstream 272994 29859036 ~ 29860334 (+) True XLOC_014118
TCONS_00028142 other downstream 932413 30518455 ~ 30518573 (+) True XLOC_014123
TCONS_00028145 other downstream 1044901 30630943 ~ 30631060 (+) True XLOC_014125
TCONS_00028149 other downstream 1293746 30879788 ~ 30882456 (+) True XLOC_014131

Expression Profile

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