RNA id: TU145601



Basic Information


Item Value
RNA id TU145601
length 304
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G126096
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25622487 ~ 25622790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATATGAATAATACTTTTTCTACACGTTGGCTGCTGCATTGTCACCTAGTGACTATCAGAGCAAGTCATCTAAAATGAATCCAGCAGAAGAACAGGAGCACATGGATGAATTCCTAACAGGATTTCCACAGTGAGATGCTCCACTATCATAAAATGTGGGTGAGCTAATTTAACTAAGTGTCTTTGCATGAGTCCCAGTTGGAATTAAATTATTCTTCCCGATGCAATAAAGGGCAGAGGAAAATATAATCCTGTTATGTTACATGAGCACAAACATAATGAGCACATTATTGTACAGTAGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145598 lncRNA downstream 3816 25618416 ~ 25618671 (-) True G126093
TU145594 lncRNA downstream 17366 25604920 ~ 25605121 (-) True G126091
TU145264 lncRNA downstream 110332 25511922 ~ 25512155 (-) True G125785
TU145262 lncRNA downstream 111046 25511122 ~ 25511441 (-) True G125783
TU145260 lncRNA downstream 111450 25510831 ~ 25511037 (-) True G125781
TU145604 lncRNA upstream 6168 25628958 ~ 25629159 (-) True G126099
TU145665 lncRNA upstream 116310 25739100 ~ 25739724 (-) True G126159
TU145667 lncRNA upstream 121020 25743810 ~ 25847250 (-) True G126161
TU145704 lncRNA upstream 203191 25825981 ~ 25827529 (-) True G126198
TU145797 lncRNA upstream 350667 25973457 ~ 25975612 (-) True G126290
XM_021626064.2 mRNA downstream 161605 25459554 ~ 25460882 (-) True si:ch211-198c19.1
XM_036943470.1 mRNA downstream 178971 25434299 ~ 25443516 (-) True LOC110539072
XR_005035994.1 mRNA downstream 181325 25428983 ~ 25441162 (-) False LOC110539072
XM_036943544.1 mRNA upstream 46236 25669026 ~ 25790258 (-) False LOC110539098
XM_036943516.1 mRNA upstream 46236 25669026 ~ 25790259 (-) False LOC110539098
XM_036943525.1 mRNA upstream 46236 25669026 ~ 25790259 (-) False LOC110539098
XM_036943534.1 mRNA upstream 46236 25669026 ~ 25790259 (-) False LOC110539098
XM_036943551.1 mRNA upstream 46236 25669026 ~ 25790259 (-) False LOC110539098
TU144748 other downstream 845860 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 1087958 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1297651 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 1352351 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 1461044 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 938824 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 1028586 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 1648470 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 2143367 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 2473892 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile