RNA id: TU146479


Basic Information

Item Value
RNA id TU146479
length 230
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G126930
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26333112 ~ 26333341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttaactggtgcttgcttcggttttagagacgttagccaggagtagccacttggattgcagctagctagctgcgatgatccaggtgaaaaggttcagagctggCGATAGGAATCGGGGGATATagagagaaaataggtccggtatgctttGGTTTGAATTGTGTTGTGCAAACTGGCGAGAGTTTTCCGAGCTATAGGTTAGCTGATGATCGCTAGCAGTgattagctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146478 lncRNA downstream 827 26332028 ~ 26332285 (-) True G126929
TU146477 lncRNA downstream 1113 26331796 ~ 26331999 (-) True G126928
TU146438 lncRNA downstream 12416 26293279 ~ 26320696 (-) False G126890
TU146439 lncRNA downstream 12416 26298642 ~ 26320696 (-) False G126890
TU146435 lncRNA downstream 12416 26317291 ~ 26320696 (-) True G126890
TU146483 lncRNA upstream 5257 26338598 ~ 26338831 (-) True G126934
TU146495 lncRNA upstream 25800 26359141 ~ 26359636 (-) True G126944
TU146546 lncRNA upstream 103129 26436470 ~ 26438255 (-) True G126992
TU146612 lncRNA upstream 210563 26543904 ~ 26547502 (-) True G127051
TU146651 lncRNA upstream 229055 26562396 ~ 26562728 (-) True G127084
XM_036943516.1 mRNA downstream 542853 25669026 ~ 25790259 (-) False LOC110539098
XM_021626126.2 mRNA upstream 217491 26550832 ~ 26559126 (-) False LOC110539162
XM_036943636.1 mRNA upstream 217491 26550832 ~ 26559127 (-) False LOC110539162
XM_036943629.1 mRNA upstream 217491 26550832 ~ 26559130 (-) False LOC110539162
XR_005036025.1 mRNA upstream 217491 26550832 ~ 26559134 (-) True LOC110539162
XM_036943657.1 mRNA upstream 243612 26576953 ~ 26579210 (-) False LOC118938772
TU144748 other downstream 1556485 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 1798583 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2008276 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 2062976 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 2171669 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 228273 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 318035 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 937919 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1432816 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1763341 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile