RNA id: TU146495


Basic Information

Item Value
RNA id TU146495
length 496
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G126944
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26359141 ~ 26359636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGATGTTTTCCCTAATGAAGTTGTGACTACACTGTCTGACAATTTTACAGGCAGTTTTCACAGCCATGATGCGCTCACATCCCAATTACTAATATCATGCTTAATCATCATCTCTTCAGTTAGCTTGAGAACTTTATCAAAGTCTCCCTCTGAGTTATCTCTGAATGTAGAAAATCTGCTTTTGAGGATTTCAATTAAACCAATACAATCCATCACAGATAATGTTGAGCTTTGTAATCCCTTCGTAGCAAAATCACTAGTGTCAAACAATTTACTAAACGTGACTAACAGGAATAAACACATTGTTCTGGATTTGTTGTAAGAGGGCATCGGCTTCTAATTTGGTTTGTCCACAAGCCTCTGAAAAATCTGCAAGAACCTCTAAAATAACATCTAGCAGGAACAGCACTTTACTCACTGACCCTGATTTTGAACTCCACCGTACATCCGTGGAGATCATCCGATCTTTCTAGCTCGATACATGGTCTATCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146483 lncRNA downstream 20310 26338598 ~ 26338831 (-) True G126934
TU146479 lncRNA downstream 25800 26333112 ~ 26333341 (-) True G126930
TU146478 lncRNA downstream 26856 26332028 ~ 26332285 (-) True G126929
TU146477 lncRNA downstream 27142 26331796 ~ 26331999 (-) True G126928
TU146439 lncRNA downstream 38445 26298642 ~ 26320696 (-) False G126890
TU146546 lncRNA upstream 76834 26436470 ~ 26438255 (-) True G126992
TU146612 lncRNA upstream 184268 26543904 ~ 26547502 (-) True G127051
TU146651 lncRNA upstream 202760 26562396 ~ 26562728 (-) True G127084
TU146652 lncRNA upstream 204456 26564092 ~ 26564332 (-) True G127085
TU146647 lncRNA upstream 266530 26626166 ~ 26626619 (-) True G127080
XM_036943516.1 mRNA downstream 568882 25669026 ~ 25790259 (-) False LOC110539098
XM_021626126.2 mRNA upstream 191196 26550832 ~ 26559126 (-) False LOC110539162
XM_036943636.1 mRNA upstream 191196 26550832 ~ 26559127 (-) False LOC110539162
XM_036943629.1 mRNA upstream 191196 26550832 ~ 26559130 (-) False LOC110539162
XR_005036025.1 mRNA upstream 191196 26550832 ~ 26559134 (-) True LOC110539162
XM_036943657.1 mRNA upstream 217317 26576953 ~ 26579210 (-) False LOC118938772
TU144748 other downstream 1582514 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 1824612 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2034305 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 2089005 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 2197698 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 201978 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 291740 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 911624 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1406521 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1737046 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile