RNA id: XM_021626126.2


Basic Information

Item Value
RNA id XM_021626126.2
length 4713
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110539162
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26550832 ~ 26559134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAATCATTTGTAGGCTATGGGCTACTCATGTTAAATTGGCAACAGTAATTCAACACGATGGATCGGATGCTTGAGTAAAAAGAGgattacacacaaaacacatttagTCTCCGTAGCAAATTGACATACATTTGCTACGATGGGTTTGTGTCACATCACACAGGTAGCTAAATCGTATTTTTTATTTGGTTACGAGTGAGTAAGTTTACATGCACAGTAATAATTTCACATTAAACTGACTATGACACTATTAAgcaatagtcatgtaaacaccttactggTTATTTTAATCGGGGAAAGTTAAAATCGAAGTAAGCATACGctgattaaaacacctggttttctaaGCAATCTTTCTAATTATTAGGACATGTTTGGAAAAGCCTGATTTACCGTGGAGCAATTACAAGTTGCGAAAACCCTATATTAAAAATAAGCAGATAATAGCATGCCAAAAGCGCGGTCGCAGTCGGAGGCGAAATTACGCGCATCCAAGGCTGTTTTTGGTTTCACTTCCTCAAAGAACCAGTACTGTGttcagtgttttttttctcctgaCATTGTTTGAGACAGGACTAGATTCCTTTTCTAACAGTCCTGGAGAAACGTTTTGTTATTATCATGTCATGCGCTATTTAATGGTTTAATAACCAAGACTGGAATTTGTTTTTGGGAGAGCTGTGGTTCCCGAGTTTTTCCGCCGCGGACTAGGACAGCGCGGCTAAGAACAATGTTATCAAAGGTTCTGACGTAAATACAGGCAGCTGAAGCCATGTATATTATGGACTCCAGTGCCGAGGAAGCCCGTGCTGGACTAACGGGCCATGTGTCCACTGTCCAAATGCTCACCTTGCACCGTGAGCTACTGGTTTCCCAGGTGAAGAGCACGCAGTGCATTATGGATAACCTCCTACAAAGTGGTTTTCTGTGTATCGAGGATGCAGAAATCATCCAGCGCGCAGCCACCAAGACAGACCAGGTGCGTAAAATCCTGGAATTGGTCCAAAGGAAAGGGGTGCAGGCATGTGAATACTTCCTATATATTCTCTACAAAGTTTATGATGCATACATAGACCTCCAACCATGGCTTAAAGAGATCAACTACCAGCCACCAGACTTCGTACGGGACATACCAGTGAAGAACACGGACCCTATTAGTAGGTACTGTGAGAAGCTGAGGCACGAGCTGGGCCGAGACACACGCTTCATTGCCTCCTACGCCCAGCAAGAGGAAACCCTGTTGGAGGAGCTCTATACAGACACCCTGATGGAGCTCCTGAATGACCGCAATGAGAGCCTGGGCCACCTAGAGGGTCTGGAGCAGCTCTTGGGAGAGCAGGGTGTCTTTAACTCACAGGCAGAGACGGTGCTCGTCACGGGAGACGCTGGGGTGGGCAAGTCCATCCTCCTCCAGAAGCTCCAGAGGCTGTGGTCCAAGAGGGAACTGGAACAGACAGACGCCATGTTCTTCTTCAAGTTCCGCTGTAGGATGTTCAGTACATTCAAGGAGACAGACGAGATCTCACTGAGGGACCTGCTTTTCAAATACAACTGCTACCCCGACCAGGATGCGGATAATGAGGTGTTCAGCTACATCCTCCGCTTCCCTGAAAAGGTTCTCTTTACGTTTGACGGCTATGATGAGATCCAGGCTGATCTGGACCTGGTGAATGTGCCTGAGGTGGTTTCTCCAGAGGAGAGGACTCACCCCCTTCTGGTGCTCATTAATCTGCTCTGTGGGAAGCTGCTCAATGGTTCCCGGAAGGTCCTGACGGCTCGGACAGGCACCGACGTCCAGAGCAGGGTGATCCGGAAGAGGGTGGCGCTGCGTGGGTTCTCTCCGGCCCACCTTCAGACCTACACCAACCTGCACTTCAAGGAGCAGGAGCACCGGAACCTGGTCTCAGTCCAGCTGGATGCCAGCCCCCACCTCTGTGGCCTCTgctccatccccctcttctgcTGGATCGTCTTCAGGAGCTTTAAACACCTGCACTCAGTCTACGACGACTTTGAGTTGCCAGAGGCTTGCGTGACCCTCACTAACATATTCCTTCTGCTGTCTGAAGTCTTCTTCAGCCGGGGGGCCGCTCCCCCACCTGTCCTCCTGAAGAGAAACACCAGGTGCCCCGCTGATACCTTCAGGGCAGGACTGAGGCCACTCACTGCCTTCTCCAAGCTGGCTCTGCTGGGCATGGAGAGAGGAGGCTTTGTGTTCGACCAGGAGGAGGTGGCCTCCTGTGGCCTGACTGACGATGACCTTAAGGTGGGTTTCCTCCGACCGGTCAGCTGCTACGATGCATGTGAAAACCCTTCCACCTTTGAGTTCCTTCACCTCACCCTGCAGTCCTTCTTGGCTGCATTCTCCCTGGTTCTGGATGAACAGGCCAGCGTAGGAAACATCCTCAAGTTCTTCACCGAGTGCAGCAGGAGGGGCAATACTTCTTGTTTATCGTGTGTCGTCCACTGCATCGGTGGCTCCTCCAAACCCAGGGGAAAGGATCCGTTCAAGACCAACGAGCATCTCCAATACGCCAACCTCTTCCTGTGTGGACTGCTGTCTAAGGCCAACGCCAGCTTGCTGGAGCACATGGTTCCTGCAGCGCTACTGAAGAGGAAGCGGGCGGTCCTCAAGTCCTACCTGTCCACCAGCGTGAGGTCCCACCTCCGCGGTTTGCCACTCTACAGCACAGAGCAGGAGGGCAGCAAGGTGCATGTCCTGCCCAACTTCCTGTGGATGCTGCGCTGCATCTTCGAGACAGGAAGTAAAGAGGTGGCACAGCTGACTGCGAAGGGAATCACAGCTGACTACATCAAGCTGGGCTACTGTAATGTGTTCTCTGGCGACTGCAGTGCCCTCAACTTTGTGCTGCAGCACCGGCGGAAGAGGCTAGGGTTGGACatggacaacaacaacatcagTGACTATGGGGTCAAGCAGCTCAGGCCTTCATTCAGTAAGATGACCGTGGTGAGATTGTGTGTCAATCAGATCTCAGACAGCAGCGTTGAGGTACTGGCTGAGGAGCTTATCAAACACAGAGTGGTGGAGGTTCTGGGACTTTACAATAATCACATTACGGACATTGGAGCCAAGCTAATCGCTCATATCATTGAGGAATGTCCTAAGTTAAGAGTCGTCAAGCTTGGCAGCAACAAGTTCACCAGTATGGGTGGCAAGTATCTGGCCAGCGCCATTCAGAAGAGCACATCTATCTTTGACGTGGGaatgtgggggaaCAGCATTGGTGATGAAGGAGCAAGAGCATTTGCAGAGGCCCTGAGGAATCACCCAAGTCTTACCAACCTCAGCCTCTCAGCCAATGGCATCGCTTCAGAAGGTGGGAGGAGCTTGGCCGAAGCACTGAAAGGCAACACAATGCTCAGAATCTTCTGGTTGGTGCAAAACGAGTTGTCAGATGATGTAGCACCAGACCTGGCAGAACTGATCAGATCCAACACAGGTCTCTCTCACCTCTGGTTAATCAATAATCAGCTGACAGTGGGTGGAATCAGACAGCTGTCAGAGGCTCTCTCCCACAACACATCACTCAAAGAGATCAGTTTGAAAGGAAACTGTCTTTCTGAAGAGGAAGAGAAGCTGTTTGAGGCGGAGGGAAGGCTACGCTTCCACTGAGTAGACAGAACTGAGCAGACAGAACTGAGCTGGAGAGTGTGTAGATTGGTCACGTCTCTTACCGAAACTTAGTTCTTTGTGTGTTTTCTTGCATACtacattttgtaaatatttgaacATCCTGCATTAGCTAGTTTATTCTGGCATATGAGTAAAAGTCTTGACCCATAAAAATACTTCCTACAGTCATATTTGTccataatgaatctctttgtatTTAGGGATTTGAAACCAGAGGTGGCGTTCTCAGAGAGGAAGTCTTCAATGTAACTTTTTTACTAGCTCGACTTTAGTTTGAAACAAATCAACTTATAAAGGGCAAACTGTTCCTTGTTTAAGCACTTTCAGTTACCCATGGAACATCTTATCATTATGCAAAGCAAATCCATTGTTTAAAtccagcttccacccccaagcaataagactgctgaaacaattaatcaaatggtcaccggaatattacattgacccccccccctcttcttgaactgcactgttggttaagggcttgtaagtaagaatttcatggtaaggtctacacttgttgtattcggtgcatgtgacaaataaagtttgatttgatttgaaactgcTTTTGTTGACCAAAGGAAATACTTTACTGATGCTGAATTGCAGTATTGAATTTCTCCTGCACCACAACAACAGAGCACTCTGTAAATAAACTGAATTTGATGTGGCGCCTGCAATTAACTGGAGGTTAGGCCACTGCTCTCAAACCTCCCTTATCATCAACCCTCACCCCTCTGATTTCTCTGCCTCATTCCCTTATTCTTGTATACTGGCCAGCACTGTATCTGTATGACACATAACAGACAGTCAGTCATGTTATGGTCAGTTTGTGGTCATGGTGACTAATGAATATAGGTTAGCAGGCGATGATAGGAACAAACAAATAGAGGAAGACAGGACATTACACAACTTCCATATACACTacaggtcaaacgttttagaacatctactcattcaagggttttgtcAATTGTACCGCAGATATGGAACCTAAATCACAGAGGATAGATGTgatggcagctgcagagaagtacctGGGTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146612 lncRNA downstream 3330 26543904 ~ 26547502 (-) True G127051
TU146546 lncRNA downstream 112577 26436470 ~ 26438255 (-) True G126992
TU146495 lncRNA downstream 191196 26359141 ~ 26359636 (-) True G126944
TU146483 lncRNA downstream 212001 26338598 ~ 26338831 (-) True G126934
TU146479 lncRNA downstream 217491 26333112 ~ 26333341 (-) True G126930
TU146651 lncRNA upstream 3270 26562396 ~ 26562728 (-) True G127084
TU146652 lncRNA upstream 4966 26564092 ~ 26564332 (-) True G127085
TU146647 lncRNA upstream 67040 26626166 ~ 26626619 (-) True G127080
TU146636 lncRNA upstream 67567 26626693 ~ 26628603 (-) False G127074
TU146638 lncRNA upstream 67704 26626830 ~ 26628603 (-) False G127074
XM_036943516.1 mRNA downstream 760573 25669026 ~ 25790259 (-) False LOC110539098
XM_036943525.1 mRNA downstream 760573 25669026 ~ 25790259 (-) False LOC110539098
XM_036943534.1 mRNA downstream 760573 25669026 ~ 25790259 (-) False LOC110539098
XM_036943551.1 mRNA downstream 760573 25669026 ~ 25790259 (-) False LOC110539098
XM_036943560.1 mRNA downstream 760573 25669026 ~ 25790259 (-) True LOC110539098
XM_036943657.1 mRNA upstream 17827 26576953 ~ 26579210 (-) False LOC118938772
XR_005036029.1 mRNA upstream 17827 26576953 ~ 26579337 (-) True LOC118938772
XM_021626147.2 mRNA upstream 26665 26585791 ~ 26588645 (-) True ggctb
XM_021626149.2 mRNA upstream 70450 26629576 ~ 26640996 (-) True LOC110539269
XM_036943662.1 mRNA upstream 82832 26641958 ~ 26675649 (-) False LOC110539285
TU144748 other downstream 1774205 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 2016303 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 2225996 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 2280696 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 2389389 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 2488 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 92250 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 712134 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1207031 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1537556 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile