RNA id: XM_036943560.1


Basic Information

Item Value
RNA id XM_036943560.1
length 7437
RNA type mRNA
GC content 0.53
exon number 32
gene id LOC110539098
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25669026 ~ 25790259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGAATCCCAGGGCTTCAAAGACTGAAACCAGGTCCAGCACCCGGACCGTAGACACACCGACAAGGACACTCCAAACTGGGATGAACGATGGATGCTGCCCAAACGCGCACACTGGAATCAAGACAACACACCAGGAGCTATCCTGATTTTACGCTTTCTTAGACCTTCACTTCACCTGGCGCCTGTTTCGATCGAAGCAAGCGAAATTGGAGAATAACTTGATTACAGGGCTTCTACAATAAATTGGGATTTAAAAATATAGATTTTGAGAGCATCTCTTCAGAAACAGGGGGACCTTTGAATTTGGATCGAAATACTGTTAAAATCTACTTGGACTGGATTTGTATTCATTTTACTCATAGGAACTTTGGAATAAAGCAGTTTTGAATTGCAGGTATTCACAGACTTGTTAATGTCATCAAAACATCTACATTAGGCTATAAATCGGCTACGCGCTCTTGAAATAATAAGTACAACGAACTTATTTTAATCAAGCTTGTGGAATTGTTGATTGTCTCTCGAAAGCATTGGAGCTTGGAACACGGAAGATATGCTTCAATGGAACTGTTCACTTTTTCAAGAAATCCCAGATGGAGGTTTCCCGGTATGAGGAGGGAATAACCAGGAAGTCCGAAGTCCTCCGACCAGGATCTCTGGGAAACAGAATTTTTTGAAAGTTCCAGGAATTTTTTAACCCTAAAAGTTCTCCTGAACGTCTGGATTGACTGACACACACAATCATGGACAGATCACTGGACCTCTGAGTGCaatcttcctctttctcctcctccttcctcctcctcctcttcctcctcctccttcctcctcctcctcctcctcttccttcatccttttcctcctcctcctcttcccattGAAGGTCCCACCTGGTTGCCAGAAAATcagtgagacagaaagacagatcaACAAGAGGTTACAAAAAAACAGAGGTTCCAACAAACCCCCTCTGGTCTTTTAATTCATTTGGTAACCATGACGACCACTCTTTCCCCCTCCTTATCTGGGCACCTGGTGAACCCCCAAGTCCCCCTGCCATCATCGTTGATGCTTCTGCTGCTGATACAACTGTTTAGTTGGTGCCCGGCTGCTCCCTCAGGGCCTGAGTCAGACACCTGCTCCACTCTGATTCAGAGCCGATTCTTCGGTcacttcctgtcctcctccacttTCCCCACGGCACCCTGCTCCTGGACCCTGCAGAACCCCGACCCGCGCCGCTACACCATCTTTATCAAGGTAACCAAACCTACCTCCACAACGGACTGCATTCCCCGGCAGCTCCGCACATTCCAGTTTGACTCATTTCTGGAGACCACGCGCACCTACCTGGGCATGGAGAGCTTCAACGAGGTGGTCAAGCTGTGTGACTCTTCATCCCCTGTGGCCTTTCTGGAGGCTGGGAAACAGTTCCTACAAATGAGGAAAGGGCCGCCACGGGCCGGCATGGAGGTCACCGCCCCTAACGCTAGCGAAGATGGGGAATTTAAGACAGAGTACCTGGTGGTGGGGAAGCGTAACCCCAGCATGGCAGCGTGTCAGATGCTGTGCCAGTGGCTGGAAGACTGCCTGGCATCCAGCACCTCTAACAGGCCCTGTGGCATCATGCAGACCCCCTGCCAGTGCTGGgagccccctcctcctccacagctcAGCGAGGGGGATGGATGCTACAGGAACGGGTTCTACCTGGAGAACTGCCTACCCAGCTCCAATGAGAAGAGTGATACTGACAGCAACGGTGGCTGGAGTGTGTGGGCGGAGTGGAAGGAGTGCAGCAGTGACTGTGGTGGTGGCGTTCAGACCCGGAGCCGTACCTGTCAATCTCCCCCGGAGGAGATGTGTGAGGGAGTATTGGAGGAGGGAAGGCCCTGTAACCCTCAGCCCTGCAGTGGCAAAGGCCGTCATCTCTCTCGCAGCCAATCACTTCGCTCCGTGGACAGCCGCAAGCGTGATGGCGGCGGTGGCGAGGTAGACAAGACGCGAGGCGGTGGCGGCGGACAGCAGGCCCCACAGACAGtGGACCAGGCTGCGTCAGGTGAGGAGTGGTCGTCGTGGAGTGTGTGTTCGGCCACGTGCGGTGAGGGCTGGCAGAGCCGCACGCGTTTCTgtgtctcctcctcctacagcacCCAGTGCAGCGGCACGCTCCGAGAGCAGAGGCCCTGCAACAACTCTGCCGTCTGTCCAGTGCACGGGACTTGGGACGAGTGGTCGCCATGGAGCTTGTGTTCGTCAACCTGCGGCCGTGGTTACCGGGATCGCACGCGAAGCTGCAAGCCCCCTCAGTTTGGGGGAGACCCCTGTATGGGGCCGGAGAAACAGACCAAGTTCTGCAACATCGCTGTCTGCCCAGTTGATGGAGTGTGGAATGAGTGGGCTAATTGGGGTTCATGCTCTGCGTCCTGCTCCAACGGGACCATGCAGCGCATCAGAGAGTGTAACGGACCTTCGTACGGAGGATCAGAGTGTCGCGGGGAGTGGATAGAGACCAGAGACTGCTTCCTACGGGAGTGCCCAGTGGAGGGGAAGTGGCATCCTTGGACGTCGTGGGTGGGCTGCACCAAGACATGTGGCGGAGGGAGCCAACAGAGACAGAGGATTTGCTATGGGCCCTTCTTTGGGGGTGAAAATTGTCCTGGAGATCGGGAGGAGGTGCGACGCTGCAATGAGAAGCGGTGTCCAGAGCCTCATGAGATCTGTGCAGAAGAGAACTTCTCCAACGTAGTGTGGAAAATGACTCCAGCAGGGGACACAGCAGCCGTACGCTGCCCTCCCAATGCCAATGGGCTGATCCTGAGGCGGTGCACTCTGGATGACGAGGGAATAGCCTACTGGGAGAACCCCACTTATATGAAGTGTATCTCCAATGACTACCGCAGCATCCAAACACTGACTCGGGAACACCTGTCCAAGGCCCAGCGGGGGCTTGTGGGGGATGGAGTTTCAGAGGTGATGACCAAGCTCAGGGTGACGTCCAGCGATGGGACCAGCTACAGTGGAGACTTGCTGGCCATAGTGGACGTACTGAAGAACATGACAGAGATATTCAGAAGGGCCTACAACAGCCCCAGCAATGCAGACATGAGAAACTTTGTCCAGTCAGTCAGTAACCTGCTgatggaggagaacagagagagatgggaagaagcACAACTGTTGGGTCCTAACATCAAGGAGCTGTTCCGGTTGGTGGAAGACTTTGTGGACGTCTACGGTCTTAGGATGAAAGACTTCCAGGACATGGTTGAGGTCACCGATAACTTAGTTCTGTCCATCCACAAGCGTCCGGTGGCAGGTAATGCAGACATCAGCTTCCCTATGAAGGGCTGGAAGGGGATGATGGACTGGGCCCGCAGCTCTGAGGACAGAGTTACTGTCTCCAAGAACATCCTCTCCACAGGCAAGCCAGATGCAGATGACTTGTCAGCGTTTGTCACCGGGATCGTTCTCTACAGAAACCTGGGCAGCATCCTATCTTTACAGAGAAACAGCACTGTGCTCAACTCCAAGGTAGTGTCTGTGACCATCAAACCCACCCCAGGATCCCTCTCTACCCCGGTGGAGGTCCAGTTCTCACACCTTTACAACGGCACCACAAACCAGACCTGCATCTCCTGGGACGAGAGTGACACCTCATCGCTGCTCGGATCGTGGTCTGCCAGGGGCTGCAGAGCCGTGCCTATCGACTCATTCAGCACCAAATGCGTGTGTGACAGACTCTCTACCTTCGCCATTTTAGCACGGCTAAATCCTGACATGAACATGGATAAAATGCAGCTTCCCTCTGTGACGCTGATGGTGGGCTGTGGAGTCTCCTCTCTCACCTTGCTGCTCCTCATCATCATCTATGTGTCGGTCTGGAGGTACATTCGCTCCGAGCGCTCCGTCATCCTCATCAACTTCTGCCTCTCCATCATCTCCTCCAACGCCCTCATCCTCATTGGTCAGACGCAGACACGGAACAAGgtgaTCTGCACGCTGGTCGCTGCTTTCCTGCATTTCTTCTTCCTGTCGTCGTTCTGTTGGGTTCTGACAGAGGCGTGGCAGTCATACATGGCCGTGACTGGCCGGCTGAGGAACCGCATCATCCGCAAGCGATTCCTGTGTCTGGGCTGGGgtCTACCTGCTCTGGTTGTGGCAGTCTCTGTGGGTTTCACCAAAGCTAAGGGATATGGCACCGTCAACTActgctGGCTGTCTCTGGAAGGTGGTCTGCTTTATGCGTTTGTGGGACCGGCTGCCGCTGTAGTCTTGGTTAACATGGTTATCGGGATTCTCGTATTTAACAAACTGGTGTCCAAAGACGGAATTACTGATATGAAACTGAAGGAGAGGGCAGGggCGTCGCTGTGGAGCTCCTGTGTGGTTCTGCCTCTCCTGGCCCTCACCTGGATGTCTGCTGTCCTGGCCATCACCGACCGGCGCTCCTCCCTCTTCCAGATCTTGTTCGCTGTGTTTGATTCGCTGGAAGGCTTCGTCATCGTCATGGTGCATTGCATCCTGCGCAGAGAGgttcaagAGGCAGTGAAGTGTCGGGTAGTGGACCGCCAGGAGGACGGGAATGGAGACTCAGGGGGATCTTTCCAGAACGGACATGCTCAGCTTATGACTGATTTCGAGAAAGACGTCGACATGGCTTGCAGAGGAGGTAAGAGTACCGGCAAAAAAAAGAgtACTCTGAAGCGTTCCTCTCTCCAGGGTGATGAGAAGCCATCCTCCCAGCCCCTGACCCTTCAGAAGGGCTCTAACTTCAACACCATGCCTGCCAGCATGGCCAAGGTCCACCTCCAGAATGTGGCAGACTACCCCAGTCATACTCTCACCCTGCGCAGGGAGAAGGGTGGTGCCACCAAGGGCATCAGCACCGAGCTGCCGGGAGCCAAGTCCATCTACATCTGTGACGGGGAGCTCTTTAAACAGCTGGACGGGGAGCTGTCTCCACGGGGGACAGGGGAGGCCGGGGGGCCTGAGGGCACAGGGTACATCATCCtgcctaacaacaacaacactggcACCCTGGGGCGGCCCGGAAAGGGCAGCAAGGAGGACACGACGGCCAAGTACAACATCAGCATTGAGCAGCAGATGCCCCAGACCAGACTCATCCACCTGGCCAACTCGGCGGGGGTGGAGGGCGTCCCGGGTTTCGCGCTGAAGAGCCTGCCTGCAGACTTGGTCAGTGTCTCCTGCTCGGAGAGGGAGTCGCCCGTCCACAACATGCAGAACGTCTCCGGAGAATCCCACATGACCAACAGCATGTGTGAACAGGGTGATTCTGGGAACTCTGGAATGATGTCCAAGAGCGAGACCGTGTCCACGCTCTCCATGAGCTCCCTggagAGACGAAAATCCCGCTACGCGGAGCTGGATTTTGAGAAGATCATGCACACACGGAAGCGTCACCAGGACATGTTCCAGGACCTGAACAGGAAGATCCACAGTGCAGACCAGGACAGGGCGTCTCCGCCTGGCGATGGGAAGGCAGGGAAGAGGTGGAGTGTGTCCTCAGCAGGCAGCGACAAGACCATCATGAGCGACAAGCAGCAGACACCCAGTAAGAGAGCCTGGGAGGGCATCAGGAAGACCCAATCTCCCCCATCGTGGATGAGGAAGGACCTGGAGCCCTTGGCGGCCTCTCCCCTGGAGCTGCAGAACGTGGAGTGGGAGAAGGCCAGCGCCACCATCCCTCTGGTGGGACAGGAGCTCATGGACCTGCAGACAGAGGtgtgagactgagacagagagacagacggagagagagacagagagcagccaACCCCGTCCCCCAGCCCagctctcagacagacagacttcgTCCCTTCTCGCAGCTCCACATCTCAATCTGGGAACCAACGACCAACGATCAATGACCAACGAAATGGGCAgtggtgagacagagacagagagagagagagagagagagagagagagagagaatggcctGATAAATGGGGGGAATGAGAACAGGTTTGCGGTGCATTTTGTTATATTTTCTTATTGCTGCTGGAATCAGTTTTTTGTTTACTATGTCAGAAAGTCATATATCTGGTCTGTTATTATCCACATTATTACTTCACTGGACACATACTtgagtccctctctcctcctggtaGATCTCTGTGGATGGTTAGCCATGTTTGGTATTTGGGTGGTGTAGGTAGTGTAGATTAAAAGGACAGACTGCCTATGGACTCACTTCACCAGCCTGCTAACAGATCACCTGGACCAGCCATACAGTTCATGTTCCAACCAAACTACATGTCCAGTACATGTCCCAAACACGCCTAGGCAGTGGAGGAGGCAGACTGCTGGACCATAACCATGTGCCTCTCCATGCCAActaagagccccccccccccaccctccactgCACTGTCAGACAGTGTCCCCACCCGCTTGACAGGAAGGGAGCAGACCGATGACATCACAGTCAGTCAAAGGGTGGAAAACCCTCCCATTGGTGGGGGCCATAGTGACATCAGCATAGACCAACAAGGATGAGATATCTCATTTGCGGAtgcccttaatgacatcacagaaAGCCGAGATGGCCATATCTCGTTGGTGGAAGCTTCTATGACCTCAGCAGAAGCCAATGAGACAGtgttttgattggttgattggttgctTGGTGTACAAGCAGGCTTGGTACATTTGTGGCAAATATAATTCTGCTTGTTCGGTAAATGCAGGTGGTAAAAAATGAAGGACACTCATGTCACAAAGTATATAAAGAATGATGCTTAATAATGACAATGGAAatgaataaatataaaaatatatatgataAATACTGTATAGGACATGACAGAGGTTGTGACTCTGCAGTATGGGGTTAGGATTAGTTGCACACAGAGAAAGCACAAGGCTCTTTTGGAGTCCTGTTGTACAGCAATGTAATTATTTCAACAGAGTTCTACAGAATGAATTTTAGCCTATAAATATCTTTCTTACTGTGCTTGGGAATTATTGTTGTCATTATTATAATTATGACCATGATTATTCACATTACATCtgcgtccgaaatggcaccctattccctatgtagtgcactgcttttgaccaggtcAAATGACAGGAATTAACAccaggttaaaagtagtgcactatatagggaatagggtgccatttcggacacatATTATGATTCCCCTCCCATCCTTTTCAGGGTACTGGAATATGAGTGTTCTGTAACTCCATGTAACAGTGTGTGTTTTGGTATCACTGACTGTCACTCCCTCCTCAGATCTGTACGTGTCTGACATGAACCCTGGCCTCTGTCCCCTGACCTTTAACCTCCACCGCCCCTCCACCTTTTTAGTTCACAGGGGTTGACTCTTTGTTAATGTACAGTTTTCAGAGCACAAAATGAATGTGTCACATTTCTAATAAAAGTATATCTATATAATAAAG

Function

GO: NA

KEGG:

id description
K04596 ADGRB1, BAI1; adhesion G protein-coupled receptor B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145604 lncRNA downstream 39867 25628958 ~ 25629159 (-) True G126099
TU145601 lncRNA downstream 46236 25622487 ~ 25622790 (-) True G126096
TU145598 lncRNA downstream 50355 25618416 ~ 25618671 (-) True G126093
TU145594 lncRNA downstream 63905 25604920 ~ 25605121 (-) True G126091
TU145264 lncRNA downstream 156871 25511922 ~ 25512155 (-) True G125785
TU145704 lncRNA upstream 35722 25825981 ~ 25827529 (-) True G126198
TU145797 lncRNA upstream 183198 25973457 ~ 25975612 (-) True G126290
TU145804 lncRNA upstream 193799 25984058 ~ 25984291 (-) True G126297
TU145827 lncRNA upstream 211840 26002099 ~ 26002320 (-) True G126320
TU145834 lncRNA upstream 214488 26004747 ~ 26005163 (-) True G126327
XM_021626064.2 mRNA downstream 208144 25459554 ~ 25460882 (-) True si:ch211-198c19.1
XM_036943470.1 mRNA downstream 225510 25434299 ~ 25443516 (-) True LOC110539072
XR_005035994.1 mRNA downstream 227864 25428983 ~ 25441162 (-) False LOC110539072
XM_021626126.2 mRNA upstream 760573 26550832 ~ 26559126 (-) False LOC110539162
XM_036943636.1 mRNA upstream 760573 26550832 ~ 26559127 (-) False LOC110539162
XM_036943629.1 mRNA upstream 760573 26550832 ~ 26559130 (-) False LOC110539162
XR_005036025.1 mRNA upstream 760573 26550832 ~ 26559134 (-) True LOC110539162
XM_036943657.1 mRNA upstream 786694 26576953 ~ 26579210 (-) False LOC118938772
TU144748 other downstream 892399 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 1134497 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1344190 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 1398890 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 1507583 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 771355 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 861117 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 1481001 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1975898 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 2306423 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile