RNA id: TU146439


Basic Information

Item Value
RNA id TU146439
length 3306
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G126890
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26293279 ~ 26320696 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTTATTTCAGGTAAACCAACAATAAACAACATTTACAGAAGGACATTACATCTTCCATAATAACATTACATACAGGTCGTAACAAATAGGTAATGCAACAGCTATTCTACTATTATATCCTAAGTTTCAGTTTATAAAGTGACCGGTAACACTTCTTCTATGTCCGAAACCACTTGTGAAAAATGATGTATTTTCAGAGCATCATACAAAAAAGAAAAAATAGATACGCAAAGagaagctttttttttttgtactgtaAAACACAGATTCAGTGTTGAGTACAGCGGGGGTTGCATGTCTGGTTCCAAAACGCCTTTCCCAACATATACTGTACGTCTGCGCAGTTAAGAAACTGACAAGGCCaaaaaaatactgtatgtgtatatatccATATATATTTAATACGAATCCTCTCTTTTATGGCGCAAAGGAGACACGCGTGACCCTGTATGTACGCAAACATAGTACAAGCGTCACTATTAAATTTTACACAAGGCGTTTCACCTCCCCTTTTACATACAGCCTAGTGAGACGGTTTATAACAAAGGATACAAAATGATTAAATATTGACATGTATCTCGAAATATGACTCAGAATGTGCACATTCCGTAGCGTGACCAGTATAGCAAACAGATCCATCTTAAGCCATTCCCCAATTCAGATTTGAATGGTGTATTTGTAAATGCATTTTATTAAACATCTGGAAGTTAACTTTACAAGCAAGAACCAATGGTAACATTAAAATGATAGCAGGCCCCATTAAAATGTTAATATTTTCGACCACCACAGTGCTCAATGTGCAATTTCACTACTTCTTTCCCAAGATTTCCCTTCATAGAGAAAATGCTTTTTGTTCCCAAAGGAGAAAAAAAGAGCTTTCAGGAACTCCACCtacgcaggcaggcaggtagtccaaaacatatacagtattttcATGTTTATGTGATGTCGCAGGCAGGAGGCAAAGGAAGAAACTTCTGGGACACAAAGGCACAAAATAAAAAGGGGGAGAAAGAAAAGTGATATGCCACACAGAAAGCAGGAGAGTAACGTATCAACAATAATTATTCAGCTACTAATACCTTAGTATCCCATAAAGCCATGCAAGGCCGAGAAGAGCGAGCTGGGCGATCTATCTCAGCAGAGCTCTCAGGTATTTACCCTCCTCTGTCACGCTGCTTTAGTCACATTAAGACGCCACTCTACTCTCCACCCTTCCTCACCGTCTTCACTACCACAACACAGAATCACTTGCCCCACTAGGAATGACACTGAAGTTCTATGAAATCACTTCAAGTATTTGTAGTAGTTCTCCTTAAAAAGTCTCACTGGGGTTGGAAACTGGGGTCTGTTGGCCTATACTATGGTTGACAAGGGAGGGCACTGATATTTCTAGTCTGTGCAGGCAAGGGCATGTGATTAAGGACAACACAGGTGCAAAAAGTGACATTTTTAATAAGCTGGAATGTAAAGTAGGGCAAGTAGATTAAAAAAGTGCATTCTCAAAAAGCTAATGACATGATatcactgtgtttctctgtcgtTGCCTCGCCTGCTCTATATCACACCAAACACCACTAGATATGGTGGGACAAttaaagctgtaacataacatgGACTTGGCCATATGGCGAACTATGTCAAAGCCTTCTACAAGACTCCCTACAAGACTTCCTTTTAgcgtgtcctcctcctcctccctctatgaTAGACTAGCAGGTGAGGCAGGGGTGGAGAGGGACTGTGTGTGGCCTAGTGTCTACAGTATAATACCTGTGACCGTCTCTCATGTattctcatgtgtgtgtgttagtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcacacACACGTCTTTCTAAGGGTGTCAGTGTGGATTAAGAAAACTAATCTCTCCTGATCGTCAGTGTGTGTCCATGATATCTCACTCAgaactctcctccccctctacttgTGAACAGTACAGGCCCATTCAGATTAGTGGTAGATTTCAAATCAATCCATAAAACAGGAACCCATATTCTCCATGTTACTGGTCATTGCTATATTACCTAGCTCACACATGACTAATATGAGCAGGTATTTTTATACACAACAACACCCAGTTGTAAATCGAACACAAAGAGATCTTTGTACCAGCCAATGAAACAAAACTATTTGTTAGATCAATATCACACGATATCAAAAAAAGTGCTCCTAGTAATTGTAATTGACGTGATAGCTGAGACCAACAGCCAATGACGTAATCGTGTAAAAAACATTTGTGATGACGTCTgatatacagtacactactgGACGGTGACGGTTCAAAGGAcgtgaaggagaagaggattgTCACGGGTCGAAGTAACCAAGAGATCAAAATCCCACTGAGCCTATTGCCATTGTGTTTTACCATCTAGATACAGTGCACAACAAGATAACAGTACCTCATGGCCTACATGGAAGCACCAATGAAGGGTATTGCCCATGTTTTGATGCACACGCAACCACACAGATGTAACACACCCACATACACTTGAGACGAACCACAGCGAATGTACCATATAACATGTGACTCTTCACGATGTCATCGACACTAATTGCTTTGTGTGTATGCATCATCTCCAGCAGAGACTAACGGATTATTATCACCAGTATCACTATTACAGTATTAGTACCATTGCTCTTATGATTATTATTGATTTGATGCCATTTGACCCTGGCCTGACAGTTACAGAGGAGGAACAGATCAAAGTTAAAGAGAAACATTACCACCGCTTGTCATTTTCAGTTCCAGTTTGTGTTGTGAGTGTGAGTGAAACTGTCCAGtgggtgtgtatctgtgtgtgtacgtgtgagtttgtgcatgcgtgcgtgaATGCATGCAAGTGCAGCATGTTTGTgaaagaatgtaagctttctcgGAGTCCGTGATATATTTTCTAAATATGagtatactgtacacacaaatatacattctcacataggtagtTAGAAACACAAGCCACAGTATGTATCAATAGTATTGTAAAGTCCCTTGATGATTAAGGGTATTGTAAATGTGTCAACGATATATGAGTATCATAACATTATAAAAGTCAACAAAAATTGCAAATTATAAAACTGAAATTGGAGGTGTCACCCACCAAAAtgtatacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatgtcaggaattgtgaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146319 lncRNA downstream 184699 26104122 ~ 26113943 (-) True G126775
TU145895 lncRNA downstream 249046 26049358 ~ 26049596 (-) True G126386
TU145890 lncRNA downstream 256546 26041892 ~ 26042096 (-) True G126381
TU145834 lncRNA downstream 293479 26004747 ~ 26005163 (-) True G126327
TU145827 lncRNA downstream 296322 26002099 ~ 26002320 (-) True G126320
TU146477 lncRNA upstream 11100 26331796 ~ 26331999 (-) True G126928
TU146478 lncRNA upstream 11332 26332028 ~ 26332285 (-) True G126929
TU146479 lncRNA upstream 12416 26333112 ~ 26333341 (-) True G126930
TU146483 lncRNA upstream 17902 26338598 ~ 26338831 (-) True G126934
TU146495 lncRNA upstream 38445 26359141 ~ 26359636 (-) True G126944
XM_036943516.1 mRNA downstream 508383 25669026 ~ 25790259 (-) False LOC110539098
XM_021626126.2 mRNA upstream 230136 26550832 ~ 26559126 (-) False LOC110539162
XM_036943636.1 mRNA upstream 230136 26550832 ~ 26559127 (-) False LOC110539162
XM_036943629.1 mRNA upstream 230136 26550832 ~ 26559130 (-) False LOC110539162
XR_005036025.1 mRNA upstream 230136 26550832 ~ 26559134 (-) True LOC110539162
XM_036943657.1 mRNA upstream 256257 26576953 ~ 26579210 (-) False LOC118938772
TU144748 other downstream 1522015 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 1764113 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1973806 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 2028506 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 2137199 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 240918 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 330680 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 950564 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 1445461 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 1775986 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile