RNA id: XM_021596795.2


Basic Information

Item Value
RNA id XM_021596795.2
length 2443
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110519925
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15216991 ~ 15230487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCTCTCTGGACACGTTCTGCAGGAGGTGTTTCAGTTTGATGCGATGTGGCTCTTGAAAATGATCAGTGTGATGCTGGTGATTACTCTCACGTTGCTAGgtGTTTCTGGGAGTAATTGGAAGGTGACCTTTAACGATACAGCTCCATGTGCCTTAAGAGGGTCATCAGTGGTGTTTGCATGCAGTTATGCCTACCCCTCAGATCAGACTATTACAAATAGCTTCTGGTATTTCTCGAGTCAAAGGAAGAACAATGATCTCTTTCTGGCCGAGGGATACAGAGGACGTGTAGAATACCTTGGAAACAAAGACAACAACTGCACTTTGAAAATTAATAACCTAATTAGTAGTGACGCATCACAATACCACTTCAGATTTGAGACGGTTAATAAAGGTGGCGAAACGAATGCATGGAGCAGCAAAACATGGGTTTCACTAAGTTTGACAGGGCTGACAGCCAAAGTACAGCCTGCAACtgtgagagcgggagagagggtgACACTAACGTGTGTCACAACCTGTACACCAAGTGACCATCCCACTATTGTTTGGTCCAGGGATGGACACTCAGTATCCAACACAGAGTTCCTGGCCAGCAGTGAGGATTCTGGCAGATACCGATGTGCTGTTCAAGGTCAAGAGAATCTCAACTCTGCTCCAATGTCTCTTGATGTCAAATATGCCCCAAGGAACACCTTGGTGTCAGTAAGTCCCTCTGGTCCAGTGGTAGAGGGAAGCTCTGTGAACCTGACCTGCAGCAGTCATGCCAACCCAGCAGTGGAGAACTACACCTGGTTTAAGAAGGATGGAACAGACACCTCACAGACAGGGTCAGGAGAGGTGTTGAGATTGACTTCTCTAACCTCCTCTGACAGTAGACAGTACTTCTGTGAGGCCAGGAACAAAGAAGGGGCTCACAACTCTACTGTTCTGTCTCTGATCCTGCAGGATACAAATACTGTCCAAATGCCAGTTTACATCAGTTCCGCGGCCACAATTTTCATGGTGATCATACTTCTTGTGTTCCTATGGATGTGGTAAGTCTCTGAAACATTGTTTACTCAATTCAATAACAGAATGTAGAGTATGATGGCCTTGTGATACCGATTTGTTCCCCCAACGAAGATTGTTTTCTTTGACAGGAAGAGCCCATTCAAATTATGTCAAAAGACTGCTGTGGACAAAAAGGTCAATGGAACACAGCATATACACTCCAATTCAACATACCAATCGCATGTCAGTGCAACAGTGTTATCTGGAGGTTCATGGTATTTGAACAATGTTCATGCGCAAGCTTTCATTCTTTCCCGGTAACATGTTACTTAGTTTAACCAGTGGATAAAGCTACGGTGAGCAGTCAATATATCaaacattttgtattgttttttacTAATTCCATCTTTCAGGATGATCAAAACCCAGTCTTATTCAGTGGAAGGACCAGTAATGACCCAGCAACACAGAAAGCTAGAACGGAGGAACGGGAAAATGCCCTCTATGCCAACATTCAACTGCCTCCCTCTCACACCCACTCCCAAGACAGTTCTCTGTACTCTGTGGTCGAGCCACAAGCTCTGCAGAACCCTCCTGACCCTTATTACGCTACCTTTGACTTCCAGCAGTTCTGCAGCTCCATCGACAGGGCCCAACTCTCAGGAGTCCATGAGGATGATGTTGTTTACTCCAAGATGAAAACCAAACAGGCCAAGGTGACAGACAACCTACAGTATGCCAGCATCCAGTTCCCCCTCCCCAGTCCTACTGCCAGGTCAGAAGAAAGATTAGAGGTGGACCATTCTGTTATCTACTCCACTGTTGCCAAACCTGAAGCCTGAGCATATCATTTCATAATGTTGAATAAACTAAGCAGCATTGGAACACATGTTAAGATATGTAAAGTATGCAATTAATGGGTAGTTATAGCAATAGATGTATATGTCTTGTACTGTACTTGTAATGCATGTGTCTCGGTGAGCTTCCATTGcttgtgattgattgattgatcgtgAAATTTCATTGGCTGACTGTTTAATTTTAAGTTTGAGGTGTGACCGCCCAGGGGAAGGTGCAGGTGAGAGGGAAGTGGCCATATGGCTGGTTTAGTTTGTAACTGTCTGACAAAGTTTGAGAAAATATTGTTGATTTATCTTGAATTTAAGTTTTGTTAGATCTTCCCTTGACCTAACCAGATCTTGTATTTTTGGTTGtttagtttgtttgttttattAAATATGTACTGTTATTACCTCCTTTTTGACTTGGTTGAAAAAGGGTCTCGGTAATTCAGTTTGTATTCACTAATGGAGgagatgaaagaaatgaaataaCTTGCAACCTGTTGTTGATTTTATTTTGCCACTCAACCCCAACTTGAAGAACCTGTGTATAATATGTGATGGGCAGAGCTACCAAGTACATGCTacagataaactcagcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260470 lncRNA downstream 805 15194197 ~ 15216186 (-) True G227717
TU260418 lncRNA downstream 45088 15158002 ~ 15171903 (-) False plm
TU260419 lncRNA downstream 45088 15158002 ~ 15171903 (-) True plm
TU260460 lncRNA downstream 50993 15165627 ~ 15165998 (-) True G227707
TU260161 lncRNA downstream 194416 15015093 ~ 15022575 (-) False G227438
TU260495 lncRNA upstream 12465 15242952 ~ 15243191 (-) True G227741
TU260496 lncRNA upstream 13534 15244021 ~ 15244286 (-) True G227742
TU260498 lncRNA upstream 15825 15246312 ~ 15246517 (-) True G227744
TU260499 lncRNA upstream 17024 15247511 ~ 15247974 (-) True G227745
TU260424 lncRNA upstream 31786 15262273 ~ 15271270 (-) True G227671
XM_036970183.1 mRNA downstream 12845 15184818 ~ 15204146 (-) False LOC110519917
XM_036970186.1 mRNA downstream 12845 15184818 ~ 15204146 (-) True LOC110519917
XM_021596777.2 mRNA downstream 45074 15158592 ~ 15171917 (-) False plm
XM_021596779.2 mRNA downstream 45075 15158592 ~ 15171916 (-) False plm
NM_001165198.2 mRNA downstream 45195 15158593 ~ 15171796 (-) False plm
XM_036964193.1 mRNA upstream 167186 15397673 ~ 15406356 (-) True si:dkey-65b12.6
XM_036970265.1 mRNA upstream 210247 15440734 ~ 15470012 (-) True LOC110519926
XR_005041210.1 mRNA upstream 285712 15516199 ~ 15525808 (-) False LOC110512370
XR_005041211.1 mRNA upstream 285712 15516199 ~ 15525808 (-) True LOC110512370
XR_005041215.1 mRNA upstream 305876 15536363 ~ 15539657 (-) False LOC110512327
TU259832 other downstream 580281 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 692137 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 692137 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 741825 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1215183 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 305878 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 370528 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 475747 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 557135 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1608902 16839389 ~ 16839839 (-) True G229373

Expression Profile